Wall clock time and date at job start Mon Mar 30 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47505 * 356.41508 * 3 2 1 5 5 C 1.36672 * 119.99739 * 262.40389 * 4 3 2 6 6 H 1.08005 * 119.99673 * 143.58773 * 5 4 3 7 7 C 1.39167 * 120.00041 * 323.59411 * 5 4 3 8 8 N 1.31288 * 119.99868 * 163.29776 * 7 5 4 9 9 Si 1.86807 * 120.00112 * 343.29122 * 7 5 4 10 10 H 1.48497 * 109.46952 * 89.23170 * 9 7 5 11 11 H 1.48499 * 109.47047 * 209.23163 * 9 7 5 12 12 H 1.48502 * 109.46697 * 329.23112 * 9 7 5 13 13 C 1.34774 * 120.00151 * 82.40396 * 4 3 2 14 14 O 1.21633 * 119.99617 * 183.74995 * 13 4 3 15 15 C 1.47570 * 120.00064 * 3.75103 * 13 4 3 16 16 N 1.32415 * 120.59504 * 354.29896 * 15 13 4 17 17 C 1.32701 * 121.17205 * 180.02562 * 16 15 13 18 18 C 1.35477 * 122.11733 * 359.97438 * 17 16 15 19 19 N 1.36293 * 120.54099 * 0.02562 * 18 17 16 20 20 C 1.36174 * 133.91137 * 180.31962 * 19 18 17 21 21 C 1.35334 * 107.13420 * 180.02562 * 20 19 18 22 22 N 1.33575 * 108.60425 * 359.63890 * 21 20 19 23 23 C 1.31829 * 109.14530 * 0.22560 * 22 21 20 24 24 H 4.40642 * 5.51318 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47311 * 236.40913 * 3 2 1 26 26 H 1.09004 * 109.47175 * 116.41354 * 3 2 1 27 27 H 0.97008 * 119.99527 * 179.97438 * 8 7 5 28 28 H 1.07998 * 118.94171 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.72732 * 180.02562 * 18 17 16 30 30 H 1.08003 * 126.43649 * 359.94057 * 20 19 18 31 31 H 1.07997 * 125.70059 * 179.89418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3776 0.0864 5 6 3.5105 -1.8949 1.2943 6 1 3.3109 -2.9313 1.5235 7 6 4.1501 -1.0863 2.2291 8 7 4.2186 -1.4626 3.4850 9 14 4.9112 0.5345 1.6969 10 1 3.8976 1.6149 1.8001 11 1 6.0646 0.8523 2.5766 12 1 5.3764 0.4248 0.2909 13 6 3.2145 -2.1353 -1.0254 14 8 3.5554 -3.3001 -0.9443 15 6 2.8881 -1.5519 -2.3409 16 7 2.4087 -0.3209 -2.4320 17 6 2.1108 0.2149 -3.6090 18 6 2.2794 -0.4606 -4.7712 19 7 2.7678 -1.7330 -4.7682 20 6 3.0456 -2.6403 -5.7450 21 6 3.5157 -3.7525 -5.1340 22 7 3.5365 -3.5381 -3.8157 23 6 3.0887 -2.3231 -3.5682 24 1 -1.0498 -0.0003 0.0002 25 1 3.0090 0.5694 0.8560 26 1 3.0091 0.4580 -0.9204 27 1 4.6648 -0.8991 4.1365 28 1 1.7216 1.2217 -3.6414 29 1 2.0246 0.0132 -5.7077 30 1 2.9140 -2.4993 -6.8077 31 1 3.8264 -4.6603 -5.6297 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491023629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:19 Heat of formation + Delta-G solvation = 151.199340 kcal Electronic energy + Delta-G solvation = -20128.207006 eV Core-core repulsion = 16993.257914 eV Total energy + Delta-G solvation = -3134.949092 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.98154 -40.93614 -39.18103 -37.25036 -35.38305 -34.48697 -33.32128 -31.58859 -30.56002 -28.43026 -27.81416 -25.67842 -24.26658 -23.11497 -21.51134 -20.22331 -19.56808 -18.96489 -18.39768 -17.71084 -17.26588 -16.92335 -16.55691 -16.20541 -15.87623 -15.29549 -14.90459 -14.82891 -14.60533 -14.42922 -14.26049 -13.92575 -13.81154 -12.93432 -12.60439 -12.55701 -12.01767 -11.43643 -11.31674 -11.21619 -10.99259 -10.87757 -10.35078 -10.05009 -9.87777 -9.17263 -8.60623 -6.23924 -0.95728 0.18631 1.14363 1.26573 1.34206 1.40176 1.65783 1.82114 1.90369 2.05762 2.10977 2.41042 2.58673 2.93665 3.02195 3.19884 3.32415 3.69517 3.78676 4.07413 4.18054 4.27541 4.38171 4.41095 4.64515 4.86648 5.15794 5.19147 5.42103 5.49670 5.80906 5.91661 6.33242 6.52743 6.75065 6.82128 6.86335 7.07705 7.66382 8.55313 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.007083 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.604992 B = 3952.243427 C = 4432.034727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C 0.178 3.822 4 N -0.439 5.439 5 C -0.337 4.337 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.895 5.895 9 Si 0.946 3.054 10 H -0.230 1.230 11 H -0.274 1.274 12 H -0.257 1.257 13 C 0.497 3.503 14 O -0.581 6.581 15 C 0.152 3.848 16 N -0.433 5.433 17 C 0.011 3.989 18 C 0.048 3.952 19 N -0.355 5.355 20 C -0.056 4.056 21 C 0.004 3.996 22 N -0.500 5.500 23 C 0.159 3.841 24 H 0.252 0.748 25 H 0.079 0.921 26 H 0.147 0.853 27 H 0.287 0.713 28 H 0.228 0.772 29 H 0.237 0.763 30 H 0.249 0.751 31 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 11.007 -21.780 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.200 4.200 3 C 0.057 3.943 4 N -0.159 5.159 5 C -0.465 4.465 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.531 5.531 9 Si 0.768 3.232 10 H -0.155 1.155 11 H -0.200 1.200 12 H -0.181 1.181 13 C 0.286 3.714 14 O -0.463 6.463 15 C -0.009 4.009 16 N -0.150 5.150 17 C -0.129 4.129 18 C -0.076 4.076 19 N -0.030 5.030 20 C -0.189 4.189 21 C -0.148 4.148 22 N -0.221 5.221 23 C -0.088 4.088 24 H 0.268 0.732 25 H 0.097 0.903 26 H 0.164 0.836 27 H 0.097 0.903 28 H 0.244 0.756 29 H 0.254 0.746 30 H 0.265 0.735 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.611 10.493 -20.328 23.555 hybrid contribution 0.197 -0.143 -0.545 0.597 sum -5.414 10.350 -20.873 23.919 Atomic orbital electron populations 1.25504 0.96324 0.98164 1.01723 1.23410 0.94769 1.02030 0.99818 1.19629 0.86087 0.83987 1.04580 1.43574 1.54345 1.12421 1.05521 1.18787 1.39305 0.97926 0.90493 0.92992 1.26241 0.95204 1.03107 0.94209 1.69740 1.40156 1.40919 1.02323 0.85943 0.79053 0.78562 0.79658 1.15471 1.19965 1.18116 1.17932 0.83348 0.86914 0.83171 1.90711 1.51886 1.17754 1.85908 1.21844 0.98590 0.90015 0.90479 1.68513 1.09175 1.08093 1.29215 1.23097 1.01417 1.03351 0.85076 1.23667 0.97408 0.82029 1.04544 1.43261 1.39172 1.12461 1.08092 1.23604 1.10044 0.89023 0.96197 1.23585 1.01928 1.01063 0.88188 1.70589 1.19861 1.13214 1.18466 1.22277 1.06903 0.91972 0.87671 0.73226 0.90341 0.83618 0.90296 0.75557 0.74643 0.73533 0.77023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.72 19.25 74.32 1.43 -5.29 16 2 C -0.20 -8.11 12.28 31.12 0.38 -7.73 16 3 C 0.18 7.91 3.98 84.57 0.34 8.25 16 4 N -0.44 -24.11 2.21 -649.05 -1.44 -25.55 16 5 C -0.34 -21.21 9.46 84.16 0.80 -20.42 16 6 H 0.05 3.79 7.85 -2.91 -0.02 3.77 16 7 C 0.02 0.97 5.37 85.00 0.46 1.43 16 8 N -0.90 -54.22 13.95 21.70 0.30 -53.92 16 9 Si 0.95 42.57 24.83 68.60 1.70 44.28 16 10 H -0.23 -8.96 6.47 99.48 0.64 -8.31 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 13 C 0.50 27.64 7.52 86.71 0.65 28.29 16 14 O -0.58 -37.41 16.08 -4.14 -0.07 -37.48 16 15 C 0.15 6.62 6.82 43.63 0.30 6.92 16 16 N -0.43 -14.54 5.19 -181.44 -0.94 -15.48 16 17 C 0.01 0.22 11.01 83.92 0.92 1.15 16 18 C 0.05 0.76 11.00 83.36 0.92 1.68 16 19 N -0.36 -8.91 2.95 -347.20 -1.02 -9.94 16 20 C -0.06 -1.05 11.80 83.35 0.98 -0.07 16 21 C 0.00 0.10 11.84 83.76 0.99 1.09 16 22 N -0.50 -20.90 10.75 -189.59 -2.04 -22.94 16 23 C 0.16 6.25 7.66 135.62 1.04 7.29 16 24 H 0.25 5.78 7.80 -4.43 -0.03 5.74 16 25 H 0.08 3.52 2.92 -2.39 -0.01 3.51 16 26 H 0.15 5.71 5.22 -2.82 -0.01 5.70 16 27 H 0.29 15.67 8.31 -92.70 -0.77 14.90 16 28 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.24 0.54 8.06 -2.91 -0.02 0.51 16 30 H 0.25 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.21 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -93.76 278.96 6.82 -86.94 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.11 Total: 11.51 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 9.21 Total: 22.58 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -5.14 Total: -127.82 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.07 Total: -37.48 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.70 Total: 44.28 kcal Total: -93.76 6.82 -86.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.136 kcal (2) G-P(sol) polarization free energy of solvation -93.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds