Wall clock time and date at job start Mon Mar 30 2020 00:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48494 * 109.47425 * 274.66477 * 3 2 1 5 5 H 1.48504 * 109.47221 * 34.66917 * 3 2 1 6 6 H 1.48502 * 109.47262 * 154.66319 * 3 2 1 7 7 C 1.40030 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00047 * 196.89262 * 7 2 1 9 9 C 1.41548 * 119.99955 * 16.90234 * 7 2 1 10 10 C 1.41178 * 120.99381 * 203.61031 * 9 7 2 11 11 C 1.37588 * 119.01982 * 179.97438 * 10 9 7 12 12 N 1.32082 * 121.10854 * 0.02562 * 11 10 9 13 13 C 1.32478 * 122.23276 * 0.02562 * 12 11 10 14 14 N 1.39369 * 119.58260 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00506 * 5.24258 * 14 13 12 16 16 O 1.21524 * 119.99322 * 355.14686 * 15 14 13 17 17 C 1.48102 * 120.00481 * 175.14507 * 15 14 13 18 18 C 1.39462 * 120.09823 * 180.02562 * 17 15 14 19 19 N 1.32079 * 119.87139 * 179.97438 * 18 17 15 20 20 C 1.32142 * 120.07203 * 0.02562 * 19 18 17 21 21 C 1.38734 * 120.19705 * 359.96579 * 20 19 18 22 22 N 1.31791 * 120.12965 * 0.02562 * 21 20 19 23 23 C 1.38626 * 120.83393 * 0.24757 * 13 12 11 24 24 H 0.96996 * 120.00260 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.48734 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.44309 * 180.02562 * 11 10 9 27 27 H 0.97003 * 120.00146 * 185.24417 * 14 13 12 28 28 H 1.08005 * 120.06787 * 0.25200 * 18 17 15 29 29 H 1.07996 * 119.89918 * 179.97438 * 20 19 18 30 30 H 1.07995 * 119.92880 * 180.02562 * 21 20 19 31 31 H 1.07999 * 120.60312 * 179.74875 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3903 2.1034 -1.3954 5 1 1.4916 2.6222 0.7964 6 1 3.5848 1.4138 0.5991 7 6 2.0077 -1.2127 0.0005 8 1 3.0527 -1.2327 0.2723 9 6 1.3458 -2.4122 -0.3553 10 6 1.8234 -3.6649 0.0872 11 6 1.1482 -4.8052 -0.2826 12 7 0.0681 -4.7433 -1.0403 13 6 -0.4200 -3.5937 -1.4823 14 7 -1.5633 -3.5927 -2.2793 15 6 -2.2259 -4.7437 -2.5089 16 8 -1.7786 -5.7951 -2.0951 17 6 -3.4990 -4.7272 -3.2654 18 6 -4.1865 -5.9170 -3.5037 19 7 -5.3217 -5.8970 -4.1785 20 6 -5.8051 -4.7520 -4.6274 21 6 -5.1237 -3.5667 -4.3919 22 7 -3.9904 -3.5775 -3.7194 23 6 0.1953 -2.3923 -1.1667 24 1 -0.4850 0.8400 -0.0004 25 1 2.7054 -3.7270 0.7074 26 1 1.5073 -5.7670 0.0524 27 1 -1.8823 -2.7636 -2.6689 28 1 -3.7937 -6.8524 -3.1334 29 1 -6.7334 -4.7389 -5.1791 30 1 -5.5229 -2.6333 -4.7604 31 1 -0.2035 -1.4576 -1.5323 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531671623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:42 Heat of formation + Delta-G solvation = 56.217875 kcal Electronic energy + Delta-G solvation = -19048.691418 eV Core-core repulsion = 15909.623620 eV Total energy + Delta-G solvation = -3139.067797 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30217 -39.41534 -37.74182 -34.72790 -34.30984 -33.68260 -31.80435 -30.57534 -28.69750 -26.04826 -25.50899 -24.64151 -22.13797 -21.84671 -20.06352 -18.09467 -17.92742 -17.34897 -16.92743 -15.70264 -15.36343 -15.32729 -15.04615 -14.25101 -14.17110 -14.12252 -13.74881 -13.06112 -12.79563 -12.64453 -12.35518 -11.86664 -11.49547 -11.42622 -11.25759 -10.93673 -10.36865 -10.21125 -9.92921 -9.82149 -9.57533 -9.39192 -9.24963 -8.04876 -7.80737 -7.08505 -6.85122 -4.64475 0.28539 0.87168 2.49158 2.75654 3.00473 3.04129 3.09412 3.26814 3.31089 3.82521 3.84174 3.92820 4.01554 4.29944 4.63695 4.72445 4.98424 5.09735 5.34664 5.64183 5.91092 6.10621 6.53166 6.59993 6.76434 6.89908 6.95067 7.06683 7.32763 7.39481 7.44984 7.72465 7.88222 8.15008 8.34701 8.62347 8.70453 8.75970 9.62605 10.03264 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.004644 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.619977 B = 6027.953001 C = 7075.852079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.143 3.857 10 C -0.283 4.283 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.333 3.667 14 N -0.634 5.634 15 C 0.557 3.443 16 O -0.467 6.467 17 C 0.041 3.959 18 C 0.105 3.895 19 N -0.441 5.441 20 C 0.062 3.938 21 C 0.050 3.950 22 N -0.413 5.413 23 C -0.238 4.238 24 H 0.283 0.717 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.418 0.582 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.176 0.824 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -1.293 -7.687 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.102 0.898 9 C 0.135 3.865 10 C -0.307 4.307 11 C -0.034 4.034 12 N -0.276 5.276 13 C 0.109 3.891 14 N -0.280 5.280 15 C 0.339 3.661 16 O -0.336 6.336 17 C -0.100 4.100 18 C -0.054 4.054 19 N -0.155 5.155 20 C -0.098 4.098 21 C -0.113 4.113 22 N -0.131 5.131 23 C -0.264 4.264 24 H 0.094 0.906 25 H 0.121 0.879 26 H 0.143 0.857 27 H 0.254 0.746 28 H 0.201 0.799 29 H 0.191 0.809 30 H 0.193 0.807 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.436 -2.745 -7.588 12.416 hybrid contribution 0.422 2.178 0.048 2.219 sum -9.015 -0.567 -7.540 11.766 Atomic orbital electron populations 1.69778 1.07722 1.29528 1.34040 1.25974 0.94764 1.01557 0.91845 0.86231 0.80618 0.80252 0.79273 1.19194 1.20160 1.18404 1.19609 0.97981 0.90671 1.40317 0.89836 1.17564 0.89778 0.92351 0.86817 1.21904 1.05244 0.93846 1.09668 1.21758 0.90829 0.96901 0.93932 1.67191 1.15666 1.26420 1.18316 1.18149 0.87150 0.91036 0.92801 1.43196 1.25475 1.10731 1.48563 1.17728 0.82670 0.85016 0.80715 1.90892 1.65398 1.29744 1.47594 1.22542 0.97627 0.90958 0.98910 1.23854 0.89853 0.99526 0.92188 1.68614 1.10835 1.28770 1.07306 1.24063 1.00328 0.89109 0.96342 1.23866 0.91519 1.00205 0.95684 1.68418 1.11150 1.28030 1.05539 1.21554 1.02410 0.95503 1.06906 0.90615 0.87868 0.85725 0.74576 0.79904 0.80889 0.80671 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.31 10.93 55.55 0.61 -18.70 16 2 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 3 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.45 -11.59 9.12 -37.65 -0.34 -11.94 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.14 3.74 5.60 -106.55 -0.60 3.15 16 10 C -0.28 -6.88 9.90 -38.70 -0.38 -7.26 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 12 N -0.56 -14.15 7.85 -12.54 -0.10 -14.24 16 13 C 0.33 8.16 7.41 -154.79 -1.15 7.02 16 14 N -0.63 -13.12 5.37 -12.28 -0.07 -13.18 16 15 C 0.56 10.96 7.77 -12.21 -0.09 10.87 16 16 O -0.47 -10.54 14.60 5.34 0.08 -10.46 16 17 C 0.04 0.64 6.75 -82.85 -0.56 0.08 16 18 C 0.11 1.45 10.77 -16.99 -0.18 1.27 16 19 N -0.44 -5.38 10.49 -12.70 -0.13 -5.51 16 20 C 0.06 0.57 11.23 -17.24 -0.19 0.38 16 21 C 0.05 0.48 11.22 -17.39 -0.20 0.29 16 22 N -0.41 -5.68 9.72 -9.62 -0.09 -5.78 16 23 C -0.24 -6.07 8.62 -38.47 -0.33 -6.40 16 24 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 25 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 26 H 0.13 2.57 8.06 -52.49 -0.42 2.14 16 27 H 0.42 7.65 8.05 -40.82 -0.33 7.32 16 28 H 0.18 2.38 7.65 -52.48 -0.40 1.98 16 29 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.13 3.26 6.21 -52.49 -0.33 2.93 16 LS Contribution 284.96 15.07 4.29 4.29 Total: -1.00 -31.31 284.96 -7.05 -38.36 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.30 Total: 10.62 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -4.32 Total: 1.88 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.22 Total: -57.42 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.31 -7.05 -38.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531671623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.578 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds