Wall clock time and date at job start Mon Mar 30 2020 01:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47212 * 2 1 4 4 C 1.36945 * 120.00100 * 275.64709 * 3 2 1 5 5 H 1.07994 * 119.99783 * 34.00370 * 4 3 2 6 6 C 1.38808 * 120.00173 * 214.00026 * 4 3 2 7 7 N 1.31623 * 119.99713 * 22.94485 * 6 4 3 8 8 Si 1.86798 * 120.00393 * 202.94065 * 6 4 3 9 9 H 1.48500 * 109.46729 * 89.99946 * 8 6 4 10 10 H 1.48490 * 109.47199 * 210.00366 * 8 6 4 11 11 H 1.48503 * 109.46794 * 330.00514 * 8 6 4 12 12 C 1.46501 * 120.00166 * 95.64634 * 3 2 1 13 13 C 1.50697 * 109.47188 * 270.00153 * 12 3 2 14 14 C 1.38070 * 120.35136 * 269.97374 * 13 12 3 15 15 N 1.31954 * 120.85873 * 179.76359 * 14 13 12 16 16 C 1.32244 * 121.65600 * 0.53127 * 15 14 13 17 17 O 1.35702 * 119.69178 * 179.74879 * 16 15 14 18 18 C 1.42906 * 116.99529 * 359.72688 * 17 16 15 19 19 C 1.38991 * 120.61947 * 359.46992 * 16 15 14 20 20 Cl 1.73606 * 120.45285 * 180.23321 * 19 16 15 21 21 C 1.38497 * 119.09273 * 0.25859 * 19 16 15 22 22 H 1.08997 * 109.46733 * 300.00069 * 1 2 3 23 23 H 1.08996 * 109.47263 * 60.00087 * 1 2 3 24 24 H 1.09005 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47117 * 239.99995 * 2 1 3 26 26 H 1.09002 * 109.47133 * 120.00351 * 2 1 3 27 27 H 0.97000 * 119.99932 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47359 * 149.99651 * 12 3 2 29 29 H 1.08999 * 109.46702 * 30.00292 * 12 3 2 30 30 H 1.08004 * 119.57441 * 0.04638 * 14 13 12 31 31 H 1.08999 * 109.47208 * 299.99591 * 18 17 16 32 32 H 1.08995 * 109.47119 * 59.99871 * 18 17 16 33 33 H 1.09007 * 109.46582 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.76496 * 179.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1366 2.0656 -1.1802 5 1 1.4327 1.8887 -1.9799 6 6 3.1611 2.9869 -1.3486 7 7 4.2519 2.8990 -0.6173 8 14 2.9919 4.3513 -2.6132 9 1 2.3639 5.5384 -1.9795 10 1 4.3354 4.7178 -3.1287 11 1 2.1417 3.8821 -3.7367 12 6 2.3802 2.0302 1.2626 13 6 1.1713 2.7240 1.8353 14 6 0.9006 4.0377 1.5080 15 7 -0.1577 4.6536 2.0000 16 6 -0.9909 4.0469 2.8286 17 8 -2.0643 4.7199 3.3147 18 6 -2.2249 6.0760 2.8936 19 6 -0.7807 2.7246 3.2016 20 17 -1.8807 1.9305 4.2849 21 6 0.3185 2.0493 2.6978 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.9681 3.5426 -0.7352 28 1 3.1678 2.7619 1.0823 29 1 2.7365 1.2794 1.9679 30 1 1.5610 4.5669 0.8370 31 1 -1.3535 6.6563 3.1969 32 1 -2.3245 6.1102 1.8087 33 1 -3.1195 6.4958 3.3537 34 1 0.5079 1.0215 2.9700 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533558706.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:23 Heat of formation + Delta-G solvation = 9.909378 kcal Electronic energy + Delta-G solvation = -18920.114724 eV Core-core repulsion = 15880.146333 eV Total energy + Delta-G solvation = -3039.968391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27669 -37.84775 -36.31890 -35.87017 -32.23149 -31.87075 -30.86957 -28.80356 -27.21880 -25.57606 -23.66979 -23.08672 -21.62692 -20.29880 -18.14557 -17.04428 -16.68188 -15.83025 -15.49524 -14.80647 -14.20111 -14.10707 -13.98408 -13.67504 -13.32116 -12.98580 -12.50494 -12.38198 -11.81973 -11.68067 -11.64101 -11.29949 -11.16923 -10.93195 -10.91670 -10.77796 -10.57394 -10.14421 -10.12599 -9.95781 -9.28587 -9.12029 -8.61079 -7.86491 -6.76927 -5.93323 -3.46038 1.40108 1.65768 2.37799 3.27202 3.29486 3.38542 3.40240 4.08627 4.39689 4.74374 5.11754 5.21546 5.39801 5.43840 5.45646 5.50491 5.57436 5.72065 5.83430 5.97399 6.20564 6.31380 6.35163 6.50589 6.56175 6.81039 6.82691 6.87820 7.08754 7.42471 7.49504 7.71748 8.18370 8.36362 9.03850 9.66764 10.22835 11.06860 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.006986 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.552300 B = 4007.192650 C = 4932.343177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.575 5.575 4 C -0.254 4.254 5 H 0.063 0.937 6 C 0.010 3.990 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.177 3.823 13 C -0.139 4.139 14 C 0.155 3.845 15 N -0.528 5.528 16 C 0.304 3.696 17 O -0.306 6.306 18 C 0.043 3.957 19 C -0.109 4.109 20 Cl -0.067 7.067 21 C -0.038 4.038 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.258 0.742 28 H 0.114 0.886 29 H 0.040 0.960 30 H 0.164 0.836 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 0.870 7.557 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.294 5.294 4 C -0.383 4.383 5 H 0.081 0.919 6 C -0.190 4.190 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.210 1.210 10 H -0.216 1.216 11 H -0.202 1.202 12 C 0.050 3.950 13 C -0.145 4.145 14 C -0.001 4.001 15 N -0.251 5.251 16 C 0.124 3.876 17 O -0.213 6.213 18 C -0.053 4.053 19 C -0.138 4.138 20 Cl -0.039 7.039 21 C -0.065 4.065 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.131 0.869 29 H 0.058 0.942 30 H 0.181 0.819 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.414 1.648 7.550 11.424 hybrid contribution -0.137 0.110 -0.528 0.556 sum -8.550 1.758 7.021 11.203 Atomic orbital electron populations 1.22381 0.99915 0.99156 1.01460 1.20886 0.91750 0.86778 0.99074 1.43809 1.75425 1.08165 1.02008 1.19074 1.07588 1.18675 0.92979 0.91942 1.25068 0.94124 1.01420 0.98398 1.69964 1.04525 1.35793 1.42287 0.86452 0.77160 0.82742 0.81547 1.20959 1.21588 1.20216 1.20055 0.91832 0.97227 0.85922 1.22217 1.01706 0.94889 0.95689 1.22500 0.91208 0.92193 0.94219 1.67470 1.06398 1.38683 1.12521 1.19358 0.88123 0.88031 0.92123 1.86249 1.41124 1.27012 1.66913 1.22787 1.01772 0.79970 1.00767 1.20823 0.97496 0.92082 1.03407 1.98325 1.62792 1.79673 1.63067 1.21297 0.90917 0.99809 0.94485 0.93574 0.93281 0.94396 0.93465 0.94512 0.93238 0.86867 0.94202 0.81916 0.92488 0.92431 0.89050 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.20 37.16 0.38 -2.66 16 2 C 0.14 2.80 6.44 -4.04 -0.03 2.77 16 3 N -0.58 -13.14 2.44 -174.61 -0.43 -13.56 16 4 C -0.25 -6.43 9.48 -15.06 -0.14 -6.58 16 5 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 6 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 7 N -0.88 -23.35 11.31 55.49 0.63 -22.72 16 8 Si 0.89 20.38 29.61 -169.99 -5.03 15.35 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.18 3.75 5.48 -5.19 -0.03 3.72 16 13 C -0.14 -2.68 5.46 -104.48 -0.57 -3.25 16 14 C 0.15 3.05 10.85 -17.56 -0.19 2.86 16 15 N -0.53 -9.99 9.22 -13.30 -0.12 -10.11 16 16 C 0.30 5.46 7.49 -17.09 -0.13 5.33 16 17 O -0.31 -4.96 9.95 -18.81 -0.19 -5.15 16 18 C 0.04 0.54 10.38 101.05 1.05 1.59 16 19 C -0.11 -1.87 6.36 -39.21 -0.25 -2.12 16 20 Cl -0.07 -1.01 28.54 -51.86 -1.48 -2.49 16 21 C -0.04 -0.66 7.84 -39.28 -0.31 -0.97 16 22 H 0.05 0.83 6.14 -51.93 -0.32 0.51 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 26 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 27 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.11 2.71 5.26 -51.93 -0.27 2.43 16 29 H 0.04 0.79 7.81 -51.93 -0.41 0.39 16 30 H 0.16 3.33 8.06 -52.48 -0.42 2.90 16 31 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.14 2.18 8.03 -52.49 -0.42 1.76 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -26.83 305.41 -6.65 -33.48 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.33 Total: -0.27 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.30 Total: 0.88 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.08 Total: -46.40 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.19 Total: -5.15 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.48 Total: -2.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.83 -6.65 -33.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533558706.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.389 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds