Wall clock time and date at job start Mon Mar 30 2020 01:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47212 * 2 1 4 4 C 1.36945 * 120.00100 * 275.64709 * 3 2 1 5 5 H 1.07994 * 119.99783 * 34.00370 * 4 3 2 6 6 C 1.38808 * 120.00173 * 214.00026 * 4 3 2 7 7 N 1.31623 * 119.99713 * 22.94485 * 6 4 3 8 8 Si 1.86798 * 120.00393 * 202.94065 * 6 4 3 9 9 H 1.48500 * 109.46729 * 89.99946 * 8 6 4 10 10 H 1.48490 * 109.47199 * 210.00366 * 8 6 4 11 11 H 1.48503 * 109.46794 * 330.00514 * 8 6 4 12 12 C 1.46501 * 120.00166 * 95.64634 * 3 2 1 13 13 C 1.50697 * 109.47188 * 270.00153 * 12 3 2 14 14 C 1.38070 * 120.35136 * 269.97374 * 13 12 3 15 15 N 1.31954 * 120.85873 * 179.76359 * 14 13 12 16 16 C 1.32244 * 121.65600 * 0.53127 * 15 14 13 17 17 O 1.35702 * 119.69178 * 179.74879 * 16 15 14 18 18 C 1.42906 * 116.99529 * 359.72688 * 17 16 15 19 19 C 1.38991 * 120.61947 * 359.46992 * 16 15 14 20 20 Cl 1.73606 * 120.45285 * 180.23321 * 19 16 15 21 21 C 1.38497 * 119.09273 * 0.25859 * 19 16 15 22 22 H 1.08997 * 109.46733 * 300.00069 * 1 2 3 23 23 H 1.08996 * 109.47263 * 60.00087 * 1 2 3 24 24 H 1.09005 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47117 * 239.99995 * 2 1 3 26 26 H 1.09002 * 109.47133 * 120.00351 * 2 1 3 27 27 H 0.97000 * 119.99932 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47359 * 149.99651 * 12 3 2 29 29 H 1.08999 * 109.46702 * 30.00292 * 12 3 2 30 30 H 1.08004 * 119.57441 * 0.04638 * 14 13 12 31 31 H 1.08999 * 109.47208 * 299.99591 * 18 17 16 32 32 H 1.08995 * 109.47119 * 59.99871 * 18 17 16 33 33 H 1.09007 * 109.46582 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.76496 * 179.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1366 2.0656 -1.1802 5 1 1.4327 1.8887 -1.9799 6 6 3.1611 2.9869 -1.3486 7 7 4.2519 2.8990 -0.6173 8 14 2.9919 4.3513 -2.6132 9 1 2.3639 5.5384 -1.9795 10 1 4.3354 4.7178 -3.1287 11 1 2.1417 3.8821 -3.7367 12 6 2.3802 2.0302 1.2626 13 6 1.1713 2.7240 1.8353 14 6 0.9006 4.0377 1.5080 15 7 -0.1577 4.6536 2.0000 16 6 -0.9909 4.0469 2.8286 17 8 -2.0643 4.7199 3.3147 18 6 -2.2249 6.0760 2.8936 19 6 -0.7807 2.7246 3.2016 20 17 -1.8807 1.9305 4.2849 21 6 0.3185 2.0493 2.6978 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.9681 3.5426 -0.7352 28 1 3.1678 2.7619 1.0823 29 1 2.7365 1.2794 1.9679 30 1 1.5610 4.5669 0.8370 31 1 -1.3535 6.6563 3.1969 32 1 -2.3245 6.1102 1.8087 33 1 -3.1195 6.4958 3.3537 34 1 0.5079 1.0215 2.9700 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533558706.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:22 Heat of formation + Delta-G solvation = -5.428157 kcal Electronic energy + Delta-G solvation = -18920.779809 eV Core-core repulsion = 15880.146333 eV Total energy + Delta-G solvation = -3040.633476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67484 -39.20498 -37.69111 -37.43445 -33.95044 -33.43788 -32.33014 -30.38439 -28.47085 -27.23182 -25.32349 -24.47209 -23.10200 -21.98438 -19.45743 -18.72587 -18.22814 -17.13042 -17.05918 -16.47083 -15.68011 -15.65897 -15.49323 -15.21658 -14.69372 -14.43488 -14.09084 -13.87561 -13.27397 -13.12793 -12.94945 -12.89277 -12.64814 -12.60765 -12.41070 -12.24700 -12.10748 -11.92137 -11.76996 -11.55140 -10.76911 -10.53667 -10.47081 -9.28902 -8.61222 -7.84000 -5.40229 -0.03129 0.22938 1.04697 1.45408 1.50952 1.56026 2.03103 2.49737 2.64539 3.23245 3.32872 3.79675 3.86212 4.03833 4.17904 4.27465 4.42030 4.45535 4.46671 4.72989 4.74376 4.82177 4.88560 4.95050 5.09983 5.28900 5.31925 5.37202 5.58432 5.68894 5.77756 6.12133 6.46426 6.73926 7.16412 7.85612 8.36055 9.12411 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.006986 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.552300 B = 4007.192650 C = 4932.343177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.050 0.950 6 C -0.024 4.024 7 N -0.907 5.907 8 Si 0.939 3.061 9 H -0.283 1.283 10 H -0.293 1.293 11 H -0.277 1.277 12 C 0.183 3.817 13 C -0.146 4.146 14 C 0.143 3.857 15 N -0.536 5.536 16 C 0.302 3.698 17 O -0.309 6.309 18 C 0.037 3.963 19 C -0.111 4.111 20 Cl -0.043 7.043 21 C -0.026 4.026 22 H 0.045 0.955 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.255 0.745 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.147 0.853 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.129 0.871 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 0.428 8.705 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.309 5.309 4 C -0.388 4.388 5 H 0.067 0.933 6 C -0.222 4.222 7 N -0.551 5.551 8 Si 0.768 3.232 9 H -0.210 1.210 10 H -0.219 1.219 11 H -0.202 1.202 12 C 0.056 3.944 13 C -0.151 4.151 14 C -0.012 4.012 15 N -0.260 5.260 16 C 0.121 3.879 17 O -0.216 6.216 18 C -0.058 4.058 19 C -0.141 4.141 20 Cl -0.014 7.014 21 C -0.053 4.053 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.062 1.204 8.710 13.362 hybrid contribution 0.249 0.239 -0.781 0.854 sum -9.813 1.443 7.929 12.698 Atomic orbital electron populations 1.22217 0.98200 1.00728 1.00391 1.21009 0.92982 0.85367 0.99485 1.43982 1.75796 1.09401 1.01770 1.19115 1.06959 1.19029 0.93747 0.93251 1.25503 0.94019 1.02812 0.99895 1.70050 1.05013 1.36373 1.43681 0.85718 0.76662 0.80892 0.79956 1.20951 1.21902 1.20224 1.19853 0.91946 0.96885 0.85697 1.21909 1.01458 0.94809 0.96925 1.22308 0.91637 0.92599 0.94670 1.67429 1.06448 1.38984 1.13138 1.19614 0.88160 0.88600 0.91531 1.86259 1.40137 1.28538 1.66703 1.23068 1.03498 0.78359 1.00835 1.20898 0.97738 0.92025 1.03422 1.98334 1.61886 1.79112 1.62110 1.21418 0.90154 1.00487 0.93220 0.93564 0.95311 0.91447 0.94618 0.92500 0.93586 0.89630 0.92939 0.83589 0.92570 0.93050 0.85317 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 10.20 71.98 0.73 -4.55 16 2 C 0.14 5.24 6.44 86.38 0.56 5.80 16 3 N -0.59 -26.84 2.44 -706.35 -1.73 -28.57 16 4 C -0.26 -13.26 9.48 84.03 0.80 -12.46 16 5 H 0.05 2.62 7.93 -2.91 -0.02 2.60 16 6 C -0.02 -1.26 4.95 84.86 0.42 -0.84 16 7 N -0.91 -48.89 11.31 21.65 0.24 -48.65 16 8 Si 0.94 42.58 29.61 68.60 2.03 44.61 16 9 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.18 7.75 5.48 85.63 0.47 8.22 16 13 C -0.15 -5.51 5.46 -19.77 -0.11 -5.62 16 14 C 0.14 5.69 10.85 84.63 0.92 6.60 16 15 N -0.54 -20.00 9.22 -308.85 -2.85 -22.84 16 16 C 0.30 10.35 7.49 84.81 0.63 10.99 16 17 O -0.31 -9.35 9.95 -90.22 -0.90 -10.24 16 18 C 0.04 0.86 10.38 113.37 1.18 2.04 16 19 C -0.11 -3.58 6.36 22.51 0.14 -3.43 16 20 Cl -0.04 -1.17 28.54 -2.72 -0.08 -1.25 16 21 C -0.03 -0.85 7.84 22.46 0.18 -0.67 16 22 H 0.05 1.55 6.14 -2.39 -0.01 1.53 16 23 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 26 H 0.06 1.94 7.83 -2.39 -0.02 1.92 16 27 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 28 H 0.09 4.18 5.26 -2.39 -0.01 4.17 16 29 H 0.05 2.03 7.81 -2.39 -0.02 2.02 16 30 H 0.15 6.21 8.06 -2.91 -0.02 6.18 16 31 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.16 4.51 8.03 -2.91 -0.02 4.49 16 Total: -1.00 -56.64 305.41 3.75 -52.89 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.10 Total: 7.98 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.92 Total: 6.07 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -4.33 Total: -100.06 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.90 Total: -10.24 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -56.64 3.75 -52.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533558706.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.464 kcal (2) G-P(sol) polarization free energy of solvation -56.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds