Wall clock time and date at job start Mon Mar 30 2020 00:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.69380 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46784 * 90.02562 * 6 5 4 8 8 C 1.34784 * 120.00129 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99667 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00509 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00501 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47560 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47178 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00206 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99680 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00327 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46871 * 89.99937 * 17 15 13 19 19 H 1.48492 * 109.47145 * 209.99850 * 17 15 13 20 20 H 1.48499 * 109.47250 * 330.00432 * 17 15 13 21 21 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 22 22 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 23 23 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 24 24 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 25 25 H 1.09000 * 109.46855 * 210.02522 * 6 5 4 26 26 H 1.08998 * 109.47319 * 330.02983 * 6 5 4 27 27 H 0.97000 * 120.00231 * 359.97438 * 7 6 5 28 28 H 0.97002 * 119.99726 * 0.02562 * 10 8 7 29 29 H 1.09001 * 109.46667 * 300.00595 * 11 10 8 30 30 H 1.08994 * 109.47218 * 60.00050 * 11 10 8 31 31 H 1.09004 * 109.46490 * 300.00045 * 12 11 10 32 32 H 1.09003 * 109.47079 * 59.99657 * 12 11 10 33 33 H 0.96997 * 119.99987 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0166 7 7 5.7817 -1.0148 1.3998 8 6 7.0377 -1.4338 1.6516 9 8 7.7904 -1.6864 0.7307 10 7 7.4598 -1.5719 2.9240 11 6 8.8252 -2.0267 3.1977 12 6 9.0457 -2.0977 4.7101 13 6 10.4504 -2.5650 4.9915 14 1 11.1190 -2.7894 4.1735 15 6 10.8823 -2.7061 6.2933 16 7 10.0683 -2.4324 7.2894 17 14 12.6233 -3.2861 6.6422 18 1 13.5277 -2.1116 6.7317 19 1 12.6492 -4.0297 7.9273 20 1 13.0773 -4.1778 5.5450 21 16 2.5060 -1.3906 0.0078 22 1 -0.3635 -0.0004 -1.0276 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5135 25 1 5.3879 -1.8249 -0.4943 26 1 5.9511 -0.1364 -0.4971 27 1 5.1813 -0.8130 2.1345 28 1 6.8594 -1.3700 3.6587 29 1 8.9729 -3.0151 2.7625 30 1 9.5362 -1.3267 2.7590 31 1 8.8978 -1.1094 5.1455 32 1 8.3347 -2.7980 5.1485 33 1 10.3722 -2.5313 8.2052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544102611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:23 Heat of formation + Delta-G solvation = -3.276618 kcal Electronic energy + Delta-G solvation = -17154.684850 eV Core-core repulsion = 14148.481129 eV Total energy + Delta-G solvation = -3006.203721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.46996 -41.02052 -36.98482 -36.15842 -34.83315 -33.98903 -31.82480 -30.54303 -27.83483 -26.52641 -25.28212 -22.95549 -22.07479 -21.11579 -20.44655 -19.52438 -18.43253 -17.64656 -16.81244 -16.80723 -16.48213 -16.21525 -15.44145 -15.29520 -15.15582 -14.52477 -14.35129 -14.26601 -13.89231 -13.81034 -13.31505 -13.19976 -12.92549 -12.51149 -12.22670 -11.71770 -11.58700 -11.52030 -11.31009 -11.30783 -10.85619 -10.69683 -10.60092 -10.45082 -9.81006 -8.23073 -6.33118 -0.75479 -0.19422 0.24971 1.26513 1.43295 1.43670 1.55135 1.81249 2.09912 2.42351 2.78413 3.12050 3.31995 3.44931 3.75914 4.11348 4.40570 4.43812 4.52166 4.54724 4.62307 4.72247 4.88624 5.07744 5.21394 5.30835 5.50926 5.61033 5.78393 5.91697 6.18090 6.80431 7.01046 7.36199 7.41881 7.50549 8.88945 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046727 B = 0.002751 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.083322 B =10175.265165 C =10454.976326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.016 4.016 3 N -0.304 5.304 4 N -0.271 5.271 5 C -0.059 4.059 6 C 0.227 3.773 7 N -0.732 5.732 8 C 0.706 3.294 9 O -0.631 6.631 10 N -0.731 5.731 11 C 0.160 3.840 12 C 0.023 3.977 13 C -0.545 4.545 14 H 0.060 0.940 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.965 3.035 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 S 0.263 5.737 22 H 0.111 0.889 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.408 0.592 28 H 0.407 0.593 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.007 0.993 32 H 0.010 0.990 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.425 0.789 -13.965 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.294 4.294 3 N -0.143 5.143 4 N -0.110 5.110 5 C -0.338 4.338 6 C 0.099 3.901 7 N -0.390 5.390 8 C 0.406 3.594 9 O -0.512 6.512 10 N -0.385 5.385 11 C 0.036 3.964 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.189 1.189 21 S 0.507 5.493 22 H 0.129 0.871 23 H 0.130 0.870 24 H 0.115 0.885 25 H 0.124 0.876 26 H 0.106 0.894 27 H 0.244 0.756 28 H 0.242 0.758 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.691 0.903 -14.630 26.179 hybrid contribution 0.531 0.337 1.105 1.271 sum -21.160 1.240 -13.525 25.144 Atomic orbital electron populations 1.20696 0.80939 1.06252 1.06027 1.30077 1.06293 0.92022 1.01017 1.71506 0.96837 1.28507 1.17427 1.71458 1.07479 1.18541 1.13569 1.29016 1.03686 0.93367 1.07722 1.19389 0.84792 1.02524 0.83380 1.44826 1.12570 1.73100 1.08524 1.15941 0.81930 0.78147 0.83419 1.90885 1.56043 1.59526 1.44761 1.45216 1.16004 1.71554 1.05773 1.21113 0.80259 0.97767 0.97255 1.19137 0.96335 0.96308 0.89688 1.21476 0.98751 1.45508 0.92610 0.92143 1.25876 1.02028 0.95318 0.96033 1.70060 1.37567 1.49669 0.99450 0.85441 0.79267 0.78578 0.77747 1.19890 1.20561 1.18931 1.83585 0.94442 1.08825 1.62474 0.87101 0.86976 0.88497 0.87581 0.89406 0.75586 0.75787 0.93297 0.93715 0.97497 0.97149 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.48 71.23 0.75 0.32 16 2 C -0.02 -0.24 7.53 88.46 0.67 0.43 16 3 N -0.30 -6.98 11.66 -50.85 -0.59 -7.57 16 4 N -0.27 -6.84 11.66 -50.85 -0.59 -7.43 16 5 C -0.06 -1.16 6.90 88.47 0.61 -0.55 16 6 C 0.23 4.90 6.27 85.64 0.54 5.44 16 7 N -0.73 -17.86 5.55 -482.29 -2.68 -20.53 16 8 C 0.71 23.78 8.57 179.05 1.53 25.32 16 9 O -0.63 -26.20 16.34 -3.99 -0.07 -26.27 16 10 N -0.73 -25.31 5.56 -478.55 -2.66 -27.97 16 11 C 0.16 6.87 5.61 86.38 0.48 7.35 16 12 C 0.02 1.15 5.09 29.85 0.15 1.30 16 13 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 17 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 S 0.26 3.22 23.04 -56.49 -1.30 1.91 16 22 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 23 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 24 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.41 8.15 8.48 -92.71 -0.79 7.36 16 28 H 0.41 12.01 8.49 -92.71 -0.79 11.22 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -73.64 309.27 -0.57 -74.21 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -0.42 Total: 11.89 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.43 Total: 10.28 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -6.24 Total: -117.63 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.07 Total: -26.27 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.30 Total: 1.91 kcal Total: -73.64 -0.57 -74.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544102611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.936 kcal (2) G-P(sol) polarization free energy of solvation -73.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds