Wall clock time and date at job start Mon Mar 30 2020 00:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86798 * 119.99864 * 2 1 4 4 H 1.48496 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47218 * 300.00156 * 3 2 1 6 6 H 1.48505 * 109.47184 * 60.00254 * 3 2 1 7 7 C 1.40028 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99959 * 170.16266 * 7 2 1 9 9 C 1.41545 * 119.99998 * 350.16132 * 7 2 1 10 10 C 1.41175 * 120.99731 * 153.73495 * 9 7 2 11 11 C 1.37585 * 119.02056 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.11387 * 359.97438 * 11 10 9 13 13 C 1.32480 * 122.22738 * 359.73057 * 12 11 10 14 14 N 1.39390 * 119.58306 * 180.26620 * 13 12 11 15 15 C 1.34778 * 120.00041 * 5.63320 * 14 13 12 16 16 O 1.21552 * 119.99475 * 5.10012 * 15 14 13 17 17 C 1.47785 * 120.00146 * 185.10867 * 15 14 13 18 18 C 1.39974 * 120.94333 * 359.71104 * 17 15 14 19 19 N 1.32139 * 118.92082 * 179.74777 * 18 17 15 20 20 C 1.31868 * 120.97087 * 0.56914 * 19 18 17 21 21 N 1.31867 * 122.10282 * 359.67853 * 20 19 18 22 22 C 1.32148 * 120.96474 * 0.02562 * 21 20 19 23 23 C 1.38620 * 120.83884 * 0.54308 * 13 12 11 24 24 H 0.97001 * 120.00292 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.48950 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.44030 * 179.97438 * 11 10 9 27 27 H 0.96999 * 120.00192 * 185.62809 * 14 13 12 28 28 H 1.08002 * 120.53247 * 0.02908 * 18 17 15 29 29 H 1.08000 * 118.94662 * 179.70531 * 20 19 18 30 30 H 1.08007 * 120.53547 * 180.02562 * 22 21 20 31 31 H 1.08001 * 120.60741 * 179.75169 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2126 7 6 2.0075 -1.2127 -0.0005 8 1 3.0756 -1.2195 -0.1603 9 6 1.3154 -2.4296 0.2084 10 6 1.8135 -3.6467 -0.3049 11 6 1.1074 -4.8056 -0.0781 12 7 -0.0208 -4.7940 0.6084 13 6 -0.5276 -3.6801 1.1159 14 7 -1.7197 -3.7323 1.8364 15 6 -2.2899 -4.9224 2.1106 16 8 -1.7191 -5.9530 1.8114 17 6 -3.6091 -4.9743 2.7748 18 6 -4.2811 -3.7999 3.1332 19 7 -5.4610 -3.8927 3.7207 20 6 -5.9996 -5.0683 3.9796 21 7 -5.3991 -6.1990 3.6638 22 6 -4.2192 -6.1992 3.0686 23 6 0.1095 -2.4625 0.9347 24 1 -0.4851 0.8400 0.0004 25 1 2.7349 -3.6677 -0.8681 26 1 1.4821 -5.7405 -0.4681 27 1 -2.1389 -2.9122 2.1406 28 1 -3.8443 -2.8335 2.9286 29 1 -6.9634 -5.1061 4.4653 30 1 -3.7338 -7.1295 2.8127 31 1 -0.3090 -1.5561 1.3467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546872735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:44 Heat of formation + Delta-G solvation = 55.843173 kcal Electronic energy + Delta-G solvation = -19049.634948 eV Core-core repulsion = 15910.550903 eV Total energy + Delta-G solvation = -3139.084046 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27622 -39.51331 -37.81881 -34.62506 -34.10137 -33.68477 -32.33440 -30.60284 -28.71886 -26.10073 -25.35901 -24.66830 -22.17696 -21.85210 -20.09966 -18.27295 -17.99764 -17.42560 -17.23143 -15.68467 -15.33664 -15.27083 -14.53893 -14.29190 -14.26775 -14.06031 -13.82613 -13.54140 -12.96401 -12.68253 -12.44447 -11.71597 -11.50640 -11.25341 -11.07788 -10.99168 -10.38085 -10.20909 -9.96414 -9.80005 -9.67195 -9.49946 -9.48561 -8.08554 -7.86960 -7.16911 -6.83912 -4.71059 0.31552 0.83459 2.47765 2.71485 2.98090 3.03195 3.09423 3.26439 3.30787 3.79086 3.80578 3.84855 3.96842 4.29683 4.61135 4.64363 4.85888 5.11953 5.55961 5.57611 5.87094 6.07222 6.44226 6.50315 6.64706 6.70941 6.85129 7.03941 7.25901 7.34661 7.61138 7.77657 7.82789 8.06900 8.30128 8.56174 8.66135 8.69593 9.55231 10.01761 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.004585 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.653143 B = 6105.577850 C = 7148.854314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.142 3.858 10 C -0.279 4.279 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.332 3.668 14 N -0.649 5.649 15 C 0.551 3.449 16 O -0.470 6.470 17 C -0.229 4.229 18 C 0.179 3.821 19 N -0.522 5.522 20 C 0.305 3.695 21 N -0.523 5.523 22 C 0.204 3.796 23 C -0.235 4.235 24 H 0.281 0.719 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.407 0.593 28 H 0.173 0.827 29 H 0.200 0.800 30 H 0.182 0.818 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 -1.964 5.607 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.133 3.867 10 C -0.303 4.303 11 C -0.036 4.036 12 N -0.273 5.273 13 C 0.108 3.892 14 N -0.295 5.295 15 C 0.334 3.666 16 O -0.340 6.340 17 C -0.237 4.237 18 C 0.012 3.988 19 N -0.235 5.235 20 C 0.018 3.982 21 N -0.236 5.236 22 C 0.038 3.962 23 C -0.261 4.261 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.143 0.857 27 H 0.243 0.757 28 H 0.190 0.810 29 H 0.216 0.784 30 H 0.199 0.801 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.892 -3.424 5.980 11.250 hybrid contribution 1.299 2.177 -0.493 2.583 sum -7.593 -1.247 5.487 9.451 Atomic orbital electron populations 1.69732 1.07612 1.29239 1.35539 1.25956 0.94888 1.01530 0.91904 0.86143 0.80852 0.80418 0.78665 1.18312 1.19823 1.19629 1.19639 0.95944 0.89954 1.42854 0.89904 1.17595 0.90294 0.92349 0.86453 1.21954 1.04128 0.94370 1.09828 1.21755 0.90451 0.96634 0.94728 1.67147 1.15117 1.27987 1.17061 1.18119 0.86339 0.91142 0.93611 1.43254 1.23570 1.08467 1.54191 1.17821 0.84082 0.84669 0.79980 1.90875 1.61994 1.32427 1.48722 1.22058 0.99054 0.97017 1.05577 1.23554 0.89103 0.98398 0.87715 1.68454 1.11540 1.29492 1.14030 1.25214 0.98972 0.82793 0.91242 1.68561 1.09886 1.31927 1.13256 1.23527 0.88514 0.98046 0.86153 1.21679 1.00920 0.95419 1.08039 0.90754 0.87807 0.85698 0.75702 0.81000 0.78357 0.80066 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.84 10.70 55.55 0.59 -18.25 16 2 C 0.08 1.76 5.31 -17.34 -0.09 1.66 16 3 Si 0.92 17.42 29.57 -169.99 -5.03 12.39 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.25 9.14 -37.65 -0.34 -11.60 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.59 5.60 -106.55 -0.60 2.99 16 10 C -0.28 -6.61 9.90 -38.71 -0.38 -6.99 16 11 C 0.12 2.74 11.15 -17.69 -0.20 2.54 16 12 N -0.55 -13.60 7.89 -12.54 -0.10 -13.70 16 13 C 0.33 7.71 7.40 -154.76 -1.15 6.56 16 14 N -0.65 -11.99 5.34 -12.37 -0.07 -12.06 16 15 C 0.55 9.91 7.73 -12.36 -0.10 9.81 16 16 O -0.47 -10.17 14.73 5.32 0.08 -10.09 16 17 C -0.23 -3.19 5.91 -104.70 -0.62 -3.81 16 18 C 0.18 2.15 10.81 -16.77 -0.18 1.97 16 19 N -0.52 -6.18 10.42 -14.24 -0.15 -6.33 16 20 C 0.30 3.25 12.27 -92.03 -1.13 2.12 16 21 N -0.52 -6.37 10.42 -14.24 -0.15 -6.52 16 22 C 0.20 2.66 10.88 -16.77 -0.18 2.48 16 23 C -0.24 -5.71 8.61 -38.47 -0.33 -6.05 16 24 H 0.28 6.02 8.29 -40.82 -0.34 5.68 16 25 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 26 H 0.13 2.51 8.06 -52.48 -0.42 2.08 16 27 H 0.41 6.03 6.85 -40.82 -0.28 5.75 16 28 H 0.17 1.66 6.55 -52.49 -0.34 1.31 16 29 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.18 2.21 7.75 -52.48 -0.41 1.81 16 31 H 0.13 3.21 6.11 -52.49 -0.32 2.89 16 LS Contribution 282.69 15.07 4.26 4.26 Total: -1.00 -30.67 282.69 -8.02 -38.69 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -2.17 Total: 9.90 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -5.30 Total: 1.70 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.13 Total: -56.85 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.67 -8.02 -38.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546872735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.533 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds