Wall clock time and date at job start Mon Mar 30 2020 00:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86798 * 119.99864 * 2 1 4 4 H 1.48496 * 109.46986 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47218 * 300.00156 * 3 2 1 6 6 H 1.48505 * 109.47184 * 60.00254 * 3 2 1 7 7 C 1.40028 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99959 * 170.16266 * 7 2 1 9 9 C 1.41545 * 119.99998 * 350.16132 * 7 2 1 10 10 C 1.41175 * 120.99731 * 153.73495 * 9 7 2 11 11 C 1.37585 * 119.02056 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.11387 * 359.97438 * 11 10 9 13 13 C 1.32480 * 122.22738 * 359.73057 * 12 11 10 14 14 N 1.39390 * 119.58306 * 180.26620 * 13 12 11 15 15 C 1.34778 * 120.00041 * 5.63320 * 14 13 12 16 16 O 1.21552 * 119.99475 * 5.10012 * 15 14 13 17 17 C 1.47785 * 120.00146 * 185.10867 * 15 14 13 18 18 C 1.39974 * 120.94333 * 359.71104 * 17 15 14 19 19 N 1.32139 * 118.92082 * 179.74777 * 18 17 15 20 20 C 1.31868 * 120.97087 * 0.56914 * 19 18 17 21 21 N 1.31867 * 122.10282 * 359.67853 * 20 19 18 22 22 C 1.32148 * 120.96474 * 0.02562 * 21 20 19 23 23 C 1.38620 * 120.83884 * 0.54308 * 13 12 11 24 24 H 0.97001 * 120.00292 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.48950 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.44030 * 179.97438 * 11 10 9 27 27 H 0.96999 * 120.00192 * 185.62809 * 14 13 12 28 28 H 1.08002 * 120.53247 * 0.02908 * 18 17 15 29 29 H 1.08000 * 118.94662 * 179.70531 * 20 19 18 30 30 H 1.08007 * 120.53547 * 180.02562 * 22 21 20 31 31 H 1.08001 * 120.60741 * 179.75169 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2126 7 6 2.0075 -1.2127 -0.0005 8 1 3.0756 -1.2195 -0.1603 9 6 1.3154 -2.4296 0.2084 10 6 1.8135 -3.6467 -0.3049 11 6 1.1074 -4.8056 -0.0781 12 7 -0.0208 -4.7940 0.6084 13 6 -0.5276 -3.6801 1.1159 14 7 -1.7197 -3.7323 1.8364 15 6 -2.2899 -4.9224 2.1106 16 8 -1.7191 -5.9530 1.8114 17 6 -3.6091 -4.9743 2.7748 18 6 -4.2811 -3.7999 3.1332 19 7 -5.4610 -3.8927 3.7207 20 6 -5.9996 -5.0683 3.9796 21 7 -5.3991 -6.1990 3.6638 22 6 -4.2192 -6.1992 3.0686 23 6 0.1095 -2.4625 0.9347 24 1 -0.4851 0.8400 0.0004 25 1 2.7349 -3.6677 -0.8681 26 1 1.4821 -5.7405 -0.4681 27 1 -2.1389 -2.9122 2.1406 28 1 -3.8443 -2.8335 2.9286 29 1 -6.9634 -5.1061 4.4653 30 1 -3.7338 -7.1295 2.8127 31 1 -0.3090 -1.5561 1.3467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546872735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:44 Heat of formation + Delta-G solvation = 37.046441 kcal Electronic energy + Delta-G solvation = -19050.450036 eV Core-core repulsion = 15910.550903 eV Total energy + Delta-G solvation = -3139.899133 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.32978 -41.03832 -39.47901 -36.23400 -35.69480 -34.82404 -33.46321 -32.42165 -30.39753 -27.93210 -26.49446 -25.65957 -23.90135 -23.44754 -21.68152 -19.66157 -19.36794 -18.57383 -18.45922 -17.32201 -16.98643 -16.52967 -16.08349 -15.97302 -15.63518 -15.53376 -14.79210 -14.70097 -14.56517 -14.35262 -14.20116 -13.17810 -12.88546 -12.80483 -12.68627 -12.11787 -12.02416 -11.86709 -11.58812 -11.22278 -11.17818 -10.89600 -10.45147 -9.94518 -9.67778 -8.92468 -8.59682 -6.58361 -0.70673 -0.13732 0.76460 0.98932 1.43162 1.54402 1.57091 1.84581 1.91556 2.21330 2.68460 2.84102 2.96825 3.05593 3.29173 3.50042 3.70559 3.73341 4.19982 4.28980 4.61586 4.73045 4.78635 4.91030 5.06245 5.16796 5.24370 5.45510 5.57797 5.68349 5.91014 6.09115 6.39330 6.53044 6.77553 6.83620 6.84969 7.10193 7.76968 8.28811 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.004585 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.653143 B = 6105.577850 C = 7148.854314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.482 4.482 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.293 4.293 11 C 0.113 3.887 12 N -0.577 5.577 13 C 0.331 3.669 14 N -0.642 5.642 15 C 0.556 3.444 16 O -0.512 6.512 17 C -0.244 4.244 18 C 0.192 3.808 19 N -0.529 5.529 20 C 0.315 3.685 21 N -0.531 5.531 22 C 0.208 3.792 23 C -0.252 4.252 24 H 0.292 0.708 25 H 0.117 0.883 26 H 0.152 0.848 27 H 0.423 0.577 28 H 0.193 0.807 29 H 0.240 0.760 30 H 0.183 0.817 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -0.845 6.341 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.317 4.317 11 C -0.040 4.040 12 N -0.297 5.297 13 C 0.105 3.895 14 N -0.290 5.290 15 C 0.342 3.658 16 O -0.385 6.385 17 C -0.251 4.251 18 C 0.025 3.975 19 N -0.243 5.243 20 C 0.029 3.971 21 N -0.245 5.245 22 C 0.041 3.959 23 C -0.277 4.277 24 H 0.103 0.897 25 H 0.135 0.865 26 H 0.169 0.831 27 H 0.261 0.739 28 H 0.210 0.790 29 H 0.256 0.744 30 H 0.200 0.800 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.105 -2.302 6.734 12.359 hybrid contribution 1.544 1.790 -0.685 2.461 sum -8.561 -0.512 6.049 10.495 Atomic orbital electron populations 1.69758 1.08821 1.30807 1.34862 1.26769 0.95690 1.04408 0.90884 0.85056 0.79261 0.75830 0.78994 1.18312 1.19192 1.18637 1.19907 0.96221 0.90916 1.44267 0.89892 1.18020 0.91166 0.93319 0.87059 1.22139 1.04892 0.94257 1.10404 1.22211 0.90081 0.97622 0.94114 1.67279 1.15872 1.28589 1.17961 1.18341 0.87370 0.90569 0.93213 1.43209 1.22361 1.09784 1.53608 1.18304 0.84939 0.83628 0.78953 1.90845 1.63454 1.33643 1.50566 1.21625 0.97508 0.98347 1.07668 1.23853 0.88893 0.98504 0.86288 1.68602 1.11277 1.29963 1.14430 1.26072 0.99699 0.81960 0.89358 1.68679 1.09460 1.32639 1.13695 1.23612 0.88798 0.97895 0.85603 1.21670 1.01343 0.95758 1.08958 0.89688 0.86507 0.83075 0.73850 0.79025 0.74438 0.79968 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.48 10.70 21.84 0.23 -38.25 16 2 C 0.04 1.80 5.31 85.29 0.45 2.25 16 3 Si 0.99 34.94 29.57 68.60 2.03 36.97 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.48 -24.28 9.14 23.52 0.21 -24.06 16 8 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 9 C 0.11 5.84 5.60 -21.11 -0.12 5.72 16 10 C -0.29 -14.13 9.90 22.84 0.23 -13.90 16 11 C 0.11 5.30 11.15 84.50 0.94 6.24 16 12 N -0.58 -28.75 7.89 -193.58 -1.53 -30.27 16 13 C 0.33 15.57 7.40 132.78 0.98 16.56 16 14 N -0.64 -23.78 5.34 -311.32 -1.66 -25.44 16 15 C 0.56 20.01 7.73 86.77 0.67 20.68 16 16 O -0.51 -22.53 14.73 -3.88 -0.06 -22.59 16 17 C -0.24 -6.54 5.91 -19.91 -0.12 -6.66 16 18 C 0.19 4.22 10.81 85.07 0.92 5.14 16 19 N -0.53 -11.07 10.42 -198.96 -2.07 -13.14 16 20 C 0.31 5.74 12.27 180.84 2.22 7.96 16 21 N -0.53 -11.81 10.42 -198.96 -2.07 -13.89 16 22 C 0.21 5.19 10.88 85.06 0.93 6.12 16 23 C -0.25 -12.48 8.61 22.99 0.20 -12.28 16 24 H 0.29 12.24 8.29 -92.71 -0.77 11.47 16 25 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 26 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 27 H 0.42 12.32 6.85 -92.71 -0.63 11.69 16 28 H 0.19 3.28 6.55 -2.91 -0.02 3.27 16 29 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.18 4.42 7.75 -2.91 -0.02 4.40 16 31 H 0.13 6.43 6.11 -2.91 -0.02 6.41 16 Total: -1.00 -66.19 282.69 2.95 -63.24 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.56 Total: 29.60 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 7.52 Total: 13.76 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -7.10 Total: -120.99 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.06 Total: -22.59 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Total: -66.19 2.95 -63.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546872735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.289 kcal (2) G-P(sol) polarization free energy of solvation -66.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds