Wall clock time and date at job start Mon Mar 30 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28926 * 121.20382 * 2 1 4 4 C 1.33499 * 117.05163 * 180.23214 * 3 2 1 5 5 N 1.34223 * 127.41380 * 179.77147 * 4 3 2 6 6 C 1.32415 * 119.99926 * 179.70927 * 5 4 3 7 7 O 1.21695 * 120.00082 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99795 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.47706 * 40.00189 * 8 6 5 10 10 N 1.46906 * 109.47064 * 159.99984 * 8 6 5 11 11 C 1.52998 * 109.47319 * 279.99869 * 8 6 5 12 12 C 1.53005 * 109.47314 * 175.00069 * 11 8 6 13 13 C 1.50701 * 109.47071 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00249 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00086 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99505 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00277 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47309 * 89.99986 * 17 15 13 19 19 H 1.48497 * 109.47137 * 210.00337 * 17 15 13 20 20 H 1.48506 * 109.46691 * 329.99818 * 17 15 13 21 21 S 1.72308 * 105.17598 * 359.51318 * 4 3 2 22 22 N 1.33510 * 121.20213 * 179.67167 * 2 1 3 23 23 H 0.96995 * 127.19142 * 0.05811 * 22 2 1 24 24 H 1.08998 * 109.46943 * 270.33154 * 1 2 3 25 25 H 1.09001 * 109.46548 * 30.32816 * 1 2 3 26 26 H 1.09000 * 109.47007 * 150.33066 * 1 2 3 27 27 H 1.00896 * 111.00309 * 296.04459 * 10 8 6 28 28 H 1.00902 * 110.99923 * 60.00622 * 10 8 6 29 29 H 1.09002 * 109.47460 * 295.00664 * 11 8 6 30 30 H 1.09008 * 109.46881 * 54.99975 * 11 8 6 31 31 H 1.08998 * 109.46768 * 300.00203 * 12 11 8 32 32 H 1.08998 * 109.46787 * 60.00323 * 12 11 8 33 33 H 0.97004 * 119.99580 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1749 1.1027 0.0000 4 6 3.5064 1.0061 -0.0048 5 7 4.3970 2.0103 -0.0100 6 6 5.6942 1.7449 -0.0086 7 8 6.0791 0.5904 -0.0030 8 6 6.6940 2.8724 -0.0151 9 1 6.3462 3.6703 0.6410 10 7 7.9927 2.3780 0.4614 11 6 6.8450 3.4121 -1.4387 12 6 7.7638 4.6355 -1.4257 13 6 7.9119 5.1674 -2.8279 14 1 7.4014 4.6818 -3.6465 15 6 8.6983 6.2746 -3.0657 16 7 9.3195 6.8663 -2.0688 17 14 8.8813 6.9345 -4.8036 18 1 7.8204 7.9399 -5.0658 19 1 10.2145 7.5711 -4.9536 20 1 8.7547 5.8168 -5.7733 21 16 3.8360 -0.6852 0.0046 22 7 2.1987 -1.1420 0.0065 23 1 1.8415 -2.0437 0.0109 24 1 -0.3633 0.0059 1.0276 25 1 -0.3632 0.8871 -0.5189 26 1 -0.3633 -0.8929 -0.5087 27 1 7.9341 2.0754 1.4222 28 1 8.3370 1.6370 -0.1308 29 1 7.2765 2.6403 -2.0761 30 1 5.8662 3.6968 -1.8250 31 1 7.3321 5.4072 -0.7884 32 1 8.7424 4.3507 -1.0395 33 1 9.8724 7.6455 -2.2361 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583750822.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:36 Heat of formation + Delta-G solvation = 28.975841 kcal Electronic energy + Delta-G solvation = -17737.517669 eV Core-core repulsion = 14732.712520 eV Total energy + Delta-G solvation = -3004.805149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97905 -39.81953 -35.48191 -34.69103 -32.66957 -32.57529 -30.79669 -29.94040 -26.79377 -24.82576 -23.00442 -21.57324 -20.70399 -19.84869 -18.76738 -17.67427 -17.09482 -16.40188 -16.15200 -15.46854 -15.19739 -14.47624 -14.38932 -14.23589 -13.45773 -13.35580 -13.24069 -12.37157 -12.15906 -11.99142 -11.88518 -11.37713 -11.19523 -10.78429 -10.55667 -10.41744 -10.19250 -10.04509 -9.61209 -9.28343 -9.21388 -8.85843 -8.32382 -8.27245 -8.09915 -5.81321 -3.82482 -0.09585 0.13952 1.10963 1.85495 2.98741 3.40698 3.43650 3.48998 3.53085 3.60529 4.01660 4.48118 4.61333 4.74042 4.92023 5.10881 5.19227 5.54002 5.81939 5.84084 6.09347 6.14741 6.63739 6.74768 6.86886 7.26131 7.30827 7.57090 7.91081 7.93132 8.12881 8.28074 8.34974 8.63209 9.25457 9.79513 11.29830 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030043 B = 0.003710 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.785195 B = 7545.325156 C = 8078.176044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.397 3.603 3 N -0.528 5.528 4 C 0.383 3.617 5 N -0.551 5.551 6 C 0.452 3.548 7 O -0.551 6.551 8 C 0.104 3.896 9 H 0.107 0.893 10 N -0.809 5.809 11 C -0.091 4.091 12 C 0.032 3.968 13 C -0.518 4.518 14 H 0.051 0.949 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 S 0.275 5.725 22 N -0.706 5.706 23 H 0.448 0.552 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.332 0.668 28 H 0.345 0.655 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.015 0.985 32 H 0.034 0.966 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.725 -20.245 6.933 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 N -0.261 5.261 4 C 0.005 3.995 5 N -0.304 5.304 6 C 0.236 3.764 7 O -0.433 6.433 8 C -0.012 4.012 9 H 0.125 0.875 10 N -0.336 5.336 11 C -0.130 4.130 12 C -0.005 4.005 13 C -0.557 4.557 14 H 0.070 0.930 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 S 0.411 5.589 22 N -0.433 5.433 23 H 0.292 0.708 24 H 0.122 0.878 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.144 0.856 28 H 0.159 0.841 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.052 0.948 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.273 -19.230 6.835 27.394 hybrid contribution -1.021 -1.396 -0.830 1.918 sum -19.295 -20.625 6.005 28.875 Atomic orbital electron populations 1.20890 0.83200 1.06030 1.05597 1.23616 0.98664 0.80018 0.86454 1.67696 1.04022 1.23944 1.30402 1.26489 0.92576 0.91836 0.88565 1.69242 1.02946 1.25575 1.32641 1.23721 0.87785 0.91626 0.73239 1.90501 1.81527 1.23805 1.47419 1.21506 0.84939 0.92898 1.01856 0.87487 1.59046 1.24310 1.43702 1.06580 1.21626 1.01404 1.00225 0.89724 1.19017 0.94921 0.90229 0.96370 1.21306 1.28357 1.12061 0.93953 0.93031 1.24992 0.95887 0.96906 0.96642 1.69988 1.31554 1.21215 1.30571 0.86649 0.77226 0.79057 0.85367 1.20785 1.21343 1.20046 1.86850 0.86185 1.09300 1.76597 1.48629 1.13035 1.11907 1.69703 0.70834 0.87779 0.87249 0.89053 0.85650 0.84141 0.93400 0.92242 0.96668 0.94762 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.23 10.42 36.01 0.38 0.15 16 2 C 0.40 2.96 7.61 -158.09 -1.20 1.76 16 3 N -0.53 -6.77 10.56 -12.97 -0.14 -6.91 16 4 C 0.38 5.96 8.37 -88.55 -0.74 5.22 16 5 N -0.55 -10.37 10.53 -13.52 -0.14 -10.51 16 6 C 0.45 8.67 6.94 -12.03 -0.08 8.59 16 7 O -0.55 -10.43 13.79 5.19 0.07 -10.35 16 8 C 0.10 2.08 3.22 -68.86 -0.22 1.86 16 9 H 0.11 2.16 8.14 -51.93 -0.42 1.74 16 10 N -0.81 -15.11 8.44 -5.65 -0.05 -15.16 16 11 C -0.09 -2.12 4.78 -26.73 -0.13 -2.25 16 12 C 0.03 0.88 4.86 -27.88 -0.14 0.75 16 13 C -0.52 -15.60 9.11 -34.44 -0.31 -15.92 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -28.15 13.29 55.43 0.74 -27.42 16 17 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 S 0.28 3.19 20.97 -107.50 -2.25 0.93 16 22 N -0.71 -4.25 6.78 31.27 0.21 -4.04 16 23 H 0.45 0.74 8.96 -40.82 -0.37 0.37 16 24 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 25 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 27 H 0.33 5.38 9.06 -39.29 -0.36 5.02 16 28 H 0.34 6.34 8.58 -39.29 -0.34 6.00 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 31 H 0.01 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 1.01 7.75 -51.93 -0.40 0.60 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -37.98 303.39 -8.52 -46.50 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.96 Total: 2.93 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.55 Total: 1.76 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 0.62 Total: -64.03 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -2.25 Total: 0.93 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -37.98 -8.52 -46.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583750822.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.476 kcal (2) G-P(sol) polarization free energy of solvation -37.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds