Wall clock time and date at job start Mon Mar 30 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28926 * 121.20382 * 2 1 4 4 C 1.33499 * 117.05163 * 180.23214 * 3 2 1 5 5 N 1.34223 * 127.41380 * 179.77147 * 4 3 2 6 6 C 1.32415 * 119.99926 * 179.70927 * 5 4 3 7 7 O 1.21695 * 120.00082 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99795 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.47706 * 40.00189 * 8 6 5 10 10 N 1.46906 * 109.47064 * 159.99984 * 8 6 5 11 11 C 1.52998 * 109.47319 * 279.99869 * 8 6 5 12 12 C 1.53005 * 109.47314 * 175.00069 * 11 8 6 13 13 C 1.50701 * 109.47071 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00249 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00086 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99505 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00277 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47309 * 89.99986 * 17 15 13 19 19 H 1.48497 * 109.47137 * 210.00337 * 17 15 13 20 20 H 1.48506 * 109.46691 * 329.99818 * 17 15 13 21 21 S 1.72308 * 105.17598 * 359.51318 * 4 3 2 22 22 N 1.33510 * 121.20213 * 179.67167 * 2 1 3 23 23 H 0.96995 * 127.19142 * 0.05811 * 22 2 1 24 24 H 1.08998 * 109.46943 * 270.33154 * 1 2 3 25 25 H 1.09001 * 109.46548 * 30.32816 * 1 2 3 26 26 H 1.09000 * 109.47007 * 150.33066 * 1 2 3 27 27 H 1.00896 * 111.00309 * 296.04459 * 10 8 6 28 28 H 1.00902 * 110.99923 * 60.00622 * 10 8 6 29 29 H 1.09002 * 109.47460 * 295.00664 * 11 8 6 30 30 H 1.09008 * 109.46881 * 54.99975 * 11 8 6 31 31 H 1.08998 * 109.46768 * 300.00203 * 12 11 8 32 32 H 1.08998 * 109.46787 * 60.00323 * 12 11 8 33 33 H 0.97004 * 119.99580 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1749 1.1027 0.0000 4 6 3.5064 1.0061 -0.0048 5 7 4.3970 2.0103 -0.0100 6 6 5.6942 1.7449 -0.0086 7 8 6.0791 0.5904 -0.0030 8 6 6.6940 2.8724 -0.0151 9 1 6.3462 3.6703 0.6410 10 7 7.9927 2.3780 0.4614 11 6 6.8450 3.4121 -1.4387 12 6 7.7638 4.6355 -1.4257 13 6 7.9119 5.1674 -2.8279 14 1 7.4014 4.6818 -3.6465 15 6 8.6983 6.2746 -3.0657 16 7 9.3195 6.8663 -2.0688 17 14 8.8813 6.9345 -4.8036 18 1 7.8204 7.9399 -5.0658 19 1 10.2145 7.5711 -4.9536 20 1 8.7547 5.8168 -5.7733 21 16 3.8360 -0.6852 0.0046 22 7 2.1987 -1.1420 0.0065 23 1 1.8415 -2.0437 0.0109 24 1 -0.3633 0.0059 1.0276 25 1 -0.3632 0.8871 -0.5189 26 1 -0.3633 -0.8929 -0.5087 27 1 7.9341 2.0754 1.4222 28 1 8.3370 1.6370 -0.1308 29 1 7.2765 2.6403 -2.0761 30 1 5.8662 3.6968 -1.8250 31 1 7.3321 5.4072 -0.7884 32 1 8.7424 4.3507 -1.0395 33 1 9.8724 7.6455 -2.2361 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583750822.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:36 Heat of formation + Delta-G solvation = -2.675035 kcal Electronic energy + Delta-G solvation = -17738.890154 eV Core-core repulsion = 14732.712520 eV Total energy + Delta-G solvation = -3006.177634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83652 -41.10643 -37.05982 -35.89728 -34.80622 -33.58488 -31.94164 -31.21329 -28.46708 -26.43163 -24.45684 -22.45521 -22.32629 -21.23865 -19.93836 -18.57577 -18.44612 -18.25672 -17.29479 -16.92857 -16.70614 -16.31297 -15.69807 -15.16333 -15.12339 -14.30134 -13.90727 -13.66207 -13.55488 -13.41726 -13.14236 -12.85578 -12.77898 -12.54316 -12.27311 -12.21037 -11.71887 -11.63871 -11.29238 -11.03644 -10.97489 -10.48727 -10.39030 -9.71555 -9.38937 -8.12551 -6.23627 -1.08208 -0.71035 0.11406 0.93336 1.41349 1.44239 1.54989 2.09660 2.17124 2.45968 2.95935 3.19210 3.19842 3.59986 3.75904 4.15359 4.35762 4.50909 4.63629 4.71683 4.83645 4.98662 5.06769 5.25402 5.53412 5.56771 5.64213 5.83683 5.98148 6.08367 6.28330 6.32039 6.52734 6.93293 7.11021 7.43789 8.99222 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030043 B = 0.003710 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.785195 B = 7545.325156 C = 8078.176044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.410 3.590 3 N -0.566 5.566 4 C 0.365 3.635 5 N -0.603 5.603 6 C 0.456 3.544 7 O -0.568 6.568 8 C 0.110 3.890 9 H 0.099 0.901 10 N -0.815 5.815 11 C -0.075 4.075 12 C 0.042 3.958 13 C -0.546 4.546 14 H 0.054 0.946 15 C 0.000 4.000 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.266 1.266 21 S 0.291 5.709 22 N -0.669 5.669 23 H 0.472 0.528 24 H 0.128 0.872 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.346 0.654 28 H 0.347 0.653 29 H 0.044 0.956 30 H 0.053 0.947 31 H -0.012 1.012 32 H 0.011 0.989 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.251 -22.383 6.118 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 N -0.300 5.300 4 C -0.011 4.011 5 N -0.361 5.361 6 C 0.238 3.762 7 O -0.451 6.451 8 C -0.005 4.005 9 H 0.116 0.884 10 N -0.344 5.344 11 C -0.113 4.113 12 C 0.005 3.995 13 C -0.584 4.584 14 H 0.072 0.928 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.190 1.190 21 S 0.428 5.572 22 N -0.398 5.398 23 H 0.322 0.678 24 H 0.146 0.854 25 H 0.125 0.875 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.007 0.993 32 H 0.029 0.971 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.892 -21.498 6.033 30.579 hybrid contribution -0.510 -0.953 -0.513 1.197 sum -21.402 -22.451 5.520 31.506 Atomic orbital electron populations 1.21247 0.78778 1.07854 1.07509 1.24496 1.00389 0.78818 0.83543 1.67705 1.03151 1.26904 1.32266 1.26604 0.93351 0.93136 0.88058 1.69105 1.02878 1.27882 1.36277 1.23092 0.88152 0.90880 0.74028 1.90473 1.82016 1.23570 1.49007 1.21141 0.86237 0.93678 0.99473 0.88359 1.58990 1.23881 1.43961 1.07569 1.21304 0.99702 0.98199 0.92143 1.18812 0.94427 0.91266 0.95015 1.21710 1.28950 1.12870 0.94893 0.92792 1.25971 0.95178 0.97011 1.01635 1.70127 1.32028 1.21694 1.33192 0.85443 0.77614 0.78563 0.79360 1.19676 1.20464 1.18987 1.86695 0.89079 1.06701 1.74681 1.48566 1.10560 1.13178 1.67480 0.67760 0.85407 0.87497 0.85084 0.84076 0.83975 0.93681 0.92849 0.99342 0.97082 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.01 10.42 71.24 0.74 0.73 16 2 C 0.41 4.80 7.61 139.06 1.06 5.86 16 3 N -0.57 -13.85 10.56 -194.96 -2.06 -15.91 16 4 C 0.36 11.33 8.37 179.62 1.50 12.84 16 5 N -0.60 -23.60 10.53 -316.21 -3.33 -26.93 16 6 C 0.46 18.17 6.94 88.02 0.61 18.78 16 7 O -0.57 -21.96 13.79 -4.33 -0.06 -22.02 16 8 C 0.11 4.66 3.22 44.17 0.14 4.80 16 9 H 0.10 4.25 8.14 -2.39 -0.02 4.23 16 10 N -0.81 -31.75 8.44 -171.80 -1.45 -33.20 16 11 C -0.07 -3.66 4.78 30.60 0.15 -3.51 16 12 C 0.04 2.45 4.86 29.85 0.15 2.60 16 13 C -0.55 -33.77 9.11 25.60 0.23 -33.53 16 14 H 0.05 3.23 7.74 -2.91 -0.02 3.20 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 16 N -0.93 -59.87 13.29 21.45 0.28 -59.59 16 17 Si 0.97 46.96 29.54 68.60 2.03 48.98 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 S 0.29 6.29 20.97 -56.49 -1.18 5.10 16 22 N -0.67 -5.57 6.78 -54.98 -0.37 -5.95 16 23 H 0.47 -0.78 8.96 -92.71 -0.83 -1.61 16 24 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.11 0.23 8.14 -2.39 -0.02 0.22 16 26 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.35 11.61 9.06 -89.70 -0.81 10.79 16 28 H 0.35 13.20 8.58 -89.69 -0.77 12.43 16 29 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 2.62 8.14 -2.38 -0.02 2.60 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.01 0.67 7.75 -2.39 -0.02 0.65 16 33 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -86.68 303.39 -2.34 -89.02 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -1.24 Total: 11.48 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.04 Total: 9.01 kcal Atomic # 7 Polarization: -134.65 SS G_CDS: -6.93 Total: -141.57 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 6.29 SS G_CDS: -1.18 Total: 5.10 kcal Total: -86.68 -2.34 -89.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583750822.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.341 kcal (2) G-P(sol) polarization free energy of solvation -86.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds