Wall clock time and date at job start Mon Mar 30 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 113.99543 * 2 1 4 4 C 1.53001 * 109.46804 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47295 * 65.00167 * 4 3 2 6 6 C 1.36933 * 119.99798 * 275.95766 * 5 4 3 7 7 H 1.08001 * 119.99493 * 146.29771 * 6 5 4 8 8 C 1.38810 * 120.00248 * 326.28626 * 6 5 4 9 9 N 1.31623 * 119.99925 * 336.38102 * 8 6 5 10 10 Si 1.86800 * 119.99836 * 156.37590 * 8 6 5 11 11 H 1.48491 * 109.47149 * 90.00909 * 10 8 6 12 12 H 1.48511 * 109.47002 * 210.00398 * 10 8 6 13 13 H 1.48495 * 109.47350 * 329.99999 * 10 8 6 14 14 C 1.46497 * 119.99877 * 95.95392 * 5 4 3 15 15 C 1.50706 * 109.47342 * 270.00424 * 14 5 4 16 16 N 1.31880 * 119.62107 * 269.98030 * 15 14 5 17 17 C 1.31857 * 121.73370 * 179.72337 * 16 15 14 18 18 C 1.38233 * 120.79184 * 0.58665 * 17 16 15 19 19 C 1.38607 * 119.17394 * 359.42384 * 18 17 16 20 20 C 1.38299 * 119.62931 * 89.99575 * 15 14 5 21 21 Cl 1.73599 * 120.43271 * 359.96549 * 20 15 14 22 22 H 1.09005 * 109.47473 * 299.99430 * 1 2 3 23 23 H 1.09004 * 109.47683 * 59.99951 * 1 2 3 24 24 H 1.09004 * 109.47257 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47476 * 60.00443 * 3 2 1 26 26 H 1.08997 * 109.47571 * 300.00050 * 3 2 1 27 27 H 1.08994 * 109.47673 * 304.99876 * 4 3 2 28 28 H 1.09002 * 109.47301 * 185.00262 * 4 3 2 29 29 H 0.96996 * 119.99574 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.47594 * 150.00267 * 14 5 4 31 31 H 1.09003 * 109.47461 * 29.99889 * 14 5 4 32 32 H 1.07996 * 119.60435 * 180.31403 * 17 16 15 33 33 H 1.08003 * 120.41435 * 179.70470 * 18 17 16 34 34 H 1.07999 * 120.79390 * 180.29536 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 3.9801 -0.7991 -1.3768 7 1 3.7633 -1.2552 -2.3315 8 6 4.2635 -1.5953 -0.2756 9 7 4.9611 -1.1065 0.7279 10 14 3.6547 -3.3604 -0.2178 11 1 4.6766 -4.2562 -0.8163 12 1 3.4157 -3.7556 1.1937 13 1 2.3879 -3.4725 -0.9844 14 6 4.4109 1.4034 -2.3722 15 6 3.2266 1.7311 -3.2447 16 7 2.9157 0.9336 -4.2480 17 6 1.8856 1.1775 -5.0342 18 6 1.0954 2.2948 -4.8391 19 6 1.3903 3.1569 -3.7946 20 6 2.4785 2.8647 -2.9844 21 17 2.8948 3.9084 -1.6612 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6884 1.8465 -0.8899 27 1 3.8514 0.5684 0.8409 28 1 3.9784 2.1766 0.0890 29 1 5.1587 -1.6627 1.4975 30 1 5.1573 0.8678 -2.9589 31 1 4.8450 2.3262 -1.9874 32 1 1.6591 0.4985 -5.8429 33 1 0.2559 2.4911 -5.4897 34 1 0.7875 4.0349 -3.6155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599437639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:58 Heat of formation + Delta-G solvation = -4.547059 kcal Electronic energy + Delta-G solvation = -19488.702573 eV Core-core repulsion = 16448.107304 eV Total energy + Delta-G solvation = -3040.595269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15358 -38.80377 -37.54720 -37.04773 -33.91211 -33.16446 -32.09302 -30.38126 -27.71917 -27.14685 -25.05831 -24.39530 -23.18111 -21.97874 -18.69751 -17.88525 -17.50477 -17.45280 -16.80179 -16.57757 -16.40440 -15.71909 -15.52496 -15.04994 -14.82478 -14.41455 -14.15561 -13.54502 -13.39444 -13.20739 -12.98538 -12.81317 -12.65453 -12.43998 -12.23527 -12.08469 -11.92674 -11.71549 -11.45594 -10.72727 -10.53486 -10.32096 -10.24845 -9.72092 -8.54696 -7.71035 -5.27635 0.06633 0.30403 1.13619 1.45548 1.48717 1.59388 2.56790 2.81626 3.21881 3.37729 3.54747 3.77504 3.82203 3.93723 4.12911 4.38628 4.48006 4.48472 4.60654 4.64092 4.72059 4.73796 4.77079 4.92043 4.96059 5.00925 5.09309 5.17759 5.67944 5.77663 5.87820 6.47793 6.68922 7.11821 7.26904 7.93712 8.41546 9.25155 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.008119 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.209555 B = 3447.930018 C = 3634.561282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.057 3.943 4 C 0.140 3.860 5 N -0.572 5.572 6 C -0.229 4.229 7 H 0.043 0.957 8 C -0.021 4.021 9 N -0.916 5.916 10 Si 0.946 3.054 11 H -0.288 1.288 12 H -0.294 1.294 13 H -0.284 1.284 14 C 0.181 3.819 15 C 0.126 3.874 16 N -0.495 5.495 17 C 0.088 3.912 18 C -0.161 4.161 19 C -0.071 4.071 20 C -0.096 4.096 21 Cl -0.056 7.056 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.247 0.753 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 11.016 -7.914 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C -0.022 4.022 4 C 0.014 3.986 5 N -0.291 5.291 6 C -0.359 4.359 7 H 0.061 0.939 8 C -0.218 4.218 9 N -0.562 5.562 10 Si 0.776 3.224 11 H -0.215 1.215 12 H -0.220 1.220 13 H -0.209 1.209 14 C 0.054 3.946 15 C -0.015 4.015 16 N -0.205 5.205 17 C -0.070 4.070 18 C -0.181 4.181 19 C -0.097 4.097 20 C -0.126 4.126 21 Cl -0.028 7.028 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.198 0.802 33 H 0.198 0.802 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.458 10.117 -7.779 15.884 hybrid contribution -0.901 -0.076 0.556 1.061 sum -10.359 10.041 -7.222 16.133 Atomic orbital electron populations 1.22769 0.82167 1.02300 0.99691 1.88171 1.19078 1.28852 1.95094 1.23303 0.97052 0.83740 0.98088 1.21088 0.89751 0.96304 0.91477 1.43703 1.73672 1.01742 1.10007 1.18838 1.39236 0.82167 0.95647 0.93908 1.25332 0.98121 1.00057 0.98242 1.70044 1.39284 1.37125 1.09734 0.85629 0.78309 0.82332 0.76157 1.21508 1.22015 1.20943 1.19898 0.90733 0.95437 0.88533 1.22425 0.98119 0.88541 0.92367 1.67700 1.18664 1.29326 1.04859 1.23465 0.89871 0.96413 0.97226 1.22468 1.02030 0.94802 0.98798 1.21867 0.94089 1.00675 0.93109 1.21964 1.00359 0.95619 0.94656 1.98340 1.93087 1.65086 1.46264 0.93371 0.94634 0.90253 0.94444 0.94108 0.90946 0.92497 0.94325 0.93132 0.91104 0.80200 0.80160 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.20 16 2 O -0.39 -18.29 9.89 -148.98 -1.47 -19.76 16 3 C 0.06 2.38 5.81 71.98 0.42 2.80 16 4 C 0.14 6.66 5.24 86.38 0.45 7.11 16 5 N -0.57 -28.94 2.45 -706.33 -1.73 -30.66 16 6 C -0.23 -13.05 8.68 84.03 0.73 -12.32 16 7 H 0.04 2.58 7.93 -2.91 -0.02 2.55 16 8 C -0.02 -1.23 4.99 84.86 0.42 -0.80 16 9 N -0.92 -54.79 11.27 21.65 0.24 -54.55 16 10 Si 0.95 48.23 29.61 68.60 2.03 50.27 16 11 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 13 H -0.28 -14.46 7.11 99.48 0.71 -13.76 16 14 C 0.18 7.94 5.60 85.64 0.48 8.42 16 15 C 0.13 4.83 6.28 42.57 0.27 5.09 16 16 N -0.50 -18.73 10.27 -183.79 -1.89 -20.62 16 17 C 0.09 2.40 11.18 84.69 0.95 3.35 16 18 C -0.16 -3.40 10.11 22.36 0.23 -3.17 16 19 C -0.07 -1.69 9.98 22.49 0.22 -1.46 16 20 C -0.10 -3.03 4.96 22.41 0.11 -2.92 16 21 Cl -0.06 -1.66 24.00 -2.72 -0.07 -1.73 16 22 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.62 5.08 -2.39 -0.01 1.61 16 27 H 0.07 4.06 5.32 -2.39 -0.01 4.05 16 28 H 0.06 2.47 6.86 -2.39 -0.02 2.45 16 29 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 31 H 0.07 2.85 6.61 -2.39 -0.02 2.83 16 32 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -69.49 297.55 3.75 -65.74 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 1.10 Total: 3.01 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.53 Total: 8.30 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.37 Total: -105.83 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.47 Total: -19.76 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.27 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.73 kcal Total: -69.49 3.75 -65.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599437639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.193 kcal (2) G-P(sol) polarization free energy of solvation -69.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds