Wall clock time and date at job start Mon Mar 30 2020 01:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00140 * 2 1 4 4 H 1.08997 * 109.47499 * 29.99554 * 3 2 1 5 5 C 1.53004 * 109.46975 * 270.00147 * 3 2 1 6 6 S 1.81399 * 109.47298 * 64.99882 * 5 3 2 7 7 C 1.81402 * 103.00209 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.46951 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00605 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99720 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99843 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00001 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47302 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47259 * 120.00425 * 12 10 8 15 15 H 1.48496 * 109.47245 * 240.00441 * 12 10 8 16 16 C 1.50696 * 109.47235 * 150.00327 * 3 2 1 17 17 C 1.38248 * 119.97128 * 219.99560 * 16 3 2 18 18 C 1.38196 * 120.02483 * 179.97438 * 17 16 3 19 19 C 1.38458 * 119.97492 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02786 * 179.97438 * 19 18 17 21 21 C 1.38465 * 119.94675 * 0.24873 * 19 18 17 22 22 C 1.38197 * 119.97511 * 359.47283 * 21 19 18 23 23 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47123 * 300.00350 * 1 2 3 25 25 H 1.08991 * 109.47275 * 60.00027 * 1 2 3 26 26 H 1.08999 * 109.46958 * 185.00101 * 5 3 2 27 27 H 1.09004 * 109.46999 * 304.99798 * 5 3 2 28 28 H 1.09000 * 109.46916 * 300.00109 * 7 6 5 29 29 H 1.08995 * 109.47069 * 59.99767 * 7 6 5 30 30 H 0.97004 * 120.00125 * 179.97438 * 11 10 8 31 31 H 1.08001 * 119.98881 * 0.02562 * 17 16 3 32 32 H 1.07995 * 120.01604 * 180.02562 * 18 17 16 33 33 H 1.08007 * 120.01064 * 179.75151 * 21 19 18 34 34 H 1.07994 * 119.98821 * 180.29814 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7713 -1.4426 6 16 0.6065 1.9633 -2.2536 7 6 1.0532 2.5105 -3.9244 8 6 -0.1990 2.7168 -4.7370 9 1 -1.1669 2.5372 -4.2927 10 6 -0.1091 3.1359 -6.0475 11 7 1.0694 3.3551 -6.5884 12 14 -1.6613 3.3910 -7.0550 13 1 -2.8497 3.0782 -6.2213 14 1 -1.7319 4.8040 -7.5063 15 1 -1.6363 2.4942 -8.2383 16 6 3.3387 1.2638 0.7103 17 6 3.7058 2.2992 1.5496 18 6 4.9235 2.2620 2.2019 19 6 5.7762 1.1874 2.0143 20 9 6.9672 1.1501 2.6511 21 6 5.4099 0.1537 1.1691 22 6 4.1891 0.1903 0.5222 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 2.7414 2.7272 -1.4439 27 1 2.8099 1.0318 -1.9816 28 1 1.6062 3.4479 -3.8640 29 1 1.6744 1.7523 -4.4010 30 1 1.1327 3.6496 -7.5105 31 1 3.0403 3.1372 1.6961 32 1 5.2100 3.0707 2.8578 33 1 6.0760 -0.6832 1.0188 34 1 3.9011 -0.6181 -0.1333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600557197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:18 Heat of formation + Delta-G solvation = -77.449205 kcal Electronic energy + Delta-G solvation = -17540.785535 eV Core-core repulsion = 14479.152736 eV Total energy + Delta-G solvation = -3061.632798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.03319 -39.61728 -37.52528 -33.16329 -32.55195 -31.28942 -28.99125 -28.50233 -26.46459 -23.93577 -23.14850 -22.84823 -20.99586 -17.84949 -16.96075 -16.72366 -16.46561 -15.74032 -15.61663 -15.45061 -14.91991 -14.63639 -14.31436 -13.70190 -13.62346 -13.31792 -12.99787 -12.76517 -12.47984 -12.43111 -12.09719 -11.78292 -11.57158 -11.25845 -10.96205 -10.86174 -10.64972 -9.98295 -9.92895 -9.43062 -9.25164 -8.74310 -8.65094 -8.61202 -6.71925 -6.21231 -4.25603 0.93994 1.09661 2.53929 3.23277 3.30630 3.36266 3.40187 3.78688 3.84523 4.10574 4.33472 4.60143 4.70830 4.79829 5.09787 5.12519 5.15993 5.22654 5.30703 5.57126 5.63698 5.74968 5.79632 5.86840 5.95996 6.07190 6.12759 6.23769 6.36131 6.72386 7.08078 7.10699 7.29622 7.72888 7.99410 8.76391 9.37628 10.90109 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031597 B = 0.003656 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.954527 B = 7657.661920 C = 8166.907384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.377 6.377 3 C 0.151 3.849 4 H 0.078 0.922 5 C -0.110 4.110 6 S -0.299 6.299 7 C 0.086 3.914 8 C -0.511 4.511 9 H 0.067 0.933 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.281 1.281 16 C -0.088 4.088 17 C -0.080 4.080 18 C -0.155 4.155 19 C 0.095 3.905 20 F -0.143 7.143 21 C -0.156 4.156 22 C -0.060 4.060 23 H 0.082 0.918 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 -4.254 16.475 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.295 6.295 3 C 0.092 3.908 4 H 0.096 0.904 5 C -0.258 4.258 6 S -0.072 6.072 7 C -0.061 4.061 8 C -0.551 4.551 9 H 0.085 0.915 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.733 3.267 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.090 4.090 17 C -0.098 4.098 18 C -0.174 4.174 19 C 0.076 3.924 20 F -0.121 7.121 21 C -0.175 4.175 22 C -0.079 4.079 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.166 -4.532 16.736 18.092 hybrid contribution 0.620 0.628 -1.115 1.422 sum 5.786 -3.904 15.621 17.109 Atomic orbital electron populations 1.23183 0.80148 1.02771 1.01705 1.87825 1.20631 1.26124 1.94962 1.20541 0.91240 0.86081 0.92944 0.90449 1.23905 1.00406 1.04016 0.97501 1.86365 1.12064 1.89556 1.19174 1.21122 1.00307 0.98477 0.86147 1.20711 0.91847 1.46496 0.96015 0.91467 1.24976 0.96741 0.94888 0.97320 1.69965 1.23113 1.45695 1.14302 0.86305 0.82664 0.77890 0.79853 1.19424 1.20745 1.20722 1.19815 0.95983 0.95348 0.97856 1.20880 0.95843 0.98209 0.94852 1.21064 0.94889 0.98469 1.03001 1.17765 0.82258 0.96720 0.95690 1.91490 1.43801 1.96632 1.80226 1.21181 0.98483 0.99051 0.98814 1.20936 0.91652 0.97827 0.97440 0.89961 0.94689 0.90291 0.89960 0.89938 0.94729 0.94621 0.92553 0.84716 0.84645 0.84677 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.57 101.05 1.07 1.32 16 2 O -0.38 -5.61 9.64 -35.23 -0.34 -5.95 16 3 C 0.15 2.11 2.53 -27.88 -0.07 2.04 16 4 H 0.08 1.03 7.65 -51.93 -0.40 0.63 16 5 C -0.11 -1.83 5.61 37.16 0.21 -1.62 16 6 S -0.30 -6.20 18.39 -107.50 -1.98 -8.18 16 7 C 0.09 2.21 5.70 36.00 0.21 2.42 16 8 C -0.51 -14.27 9.13 -34.44 -0.31 -14.58 16 9 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 10 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 11 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 12 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.09 -1.09 4.97 -104.62 -0.52 -1.61 16 17 C -0.08 -0.85 9.67 -39.59 -0.38 -1.24 16 18 C -0.16 -1.61 10.03 -39.52 -0.40 -2.00 16 19 C 0.09 1.07 7.30 -39.42 -0.29 0.79 16 20 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 21 C -0.16 -1.72 10.03 -39.51 -0.40 -2.11 16 22 C -0.06 -0.72 9.35 -39.59 -0.37 -1.09 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.08 1.26 4.87 -37.60 -0.18 1.08 16 26 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 27 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 28 H 0.03 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.13 1.19 8.04 -52.49 -0.42 0.76 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.14 1.63 7.78 -52.49 -0.41 1.22 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -29.50 309.05 -7.59 -37.09 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.33 Total: -1.00 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.35 Total: -15.99 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.74 Total: -25.16 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.34 Total: -5.95 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -6.20 SS G_CDS: -1.98 Total: -8.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.50 -7.59 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600557197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.361 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds