Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99682 * 2 1 4 4 H 1.09001 * 109.47626 * 30.00074 * 3 2 1 5 5 C 1.53006 * 109.47036 * 149.99938 * 3 2 1 6 6 S 1.81399 * 109.47007 * 299.99430 * 5 3 2 7 7 C 1.81393 * 103.00238 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47519 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99595 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00252 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99976 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99769 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47476 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46947 * 120.00423 * 12 10 8 15 15 H 1.48507 * 109.46864 * 239.99896 * 12 10 8 16 16 C 1.50699 * 109.47044 * 269.99525 * 3 2 1 17 17 C 1.38248 * 119.97407 * 324.72404 * 16 3 2 18 18 C 1.38200 * 120.02474 * 179.76532 * 17 16 3 19 19 C 1.38460 * 119.97314 * 0.50971 * 18 17 16 20 20 F 1.35104 * 120.02542 * 179.76456 * 19 18 17 21 21 C 1.38467 * 119.95038 * 359.75020 * 19 18 17 22 22 C 1.38195 * 119.97260 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47333 * 300.00404 * 1 2 3 25 25 H 1.08999 * 109.46675 * 60.00707 * 1 2 3 26 26 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 27 27 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 28 28 H 1.08997 * 109.47504 * 300.00249 * 7 6 5 29 29 H 1.09001 * 109.46984 * 59.99943 * 7 6 5 30 30 H 0.97000 * 120.00026 * 179.97438 * 11 10 8 31 31 H 1.07993 * 119.98489 * 0.02684 * 17 16 3 32 32 H 1.07997 * 120.01177 * 180.26141 * 18 17 16 33 33 H 1.07997 * 120.01352 * 179.97438 * 21 19 18 34 34 H 1.07994 * 119.98624 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 16 3.1129 0.7111 2.4316 7 6 4.7948 0.7246 3.1107 8 6 4.7588 0.2814 4.5507 9 1 3.8182 0.0175 5.0110 10 6 5.9268 0.2118 5.2800 11 7 7.0723 0.5327 4.7192 12 14 5.8820 -0.3369 7.0650 13 1 4.4813 -0.6387 7.4551 14 1 6.7147 -1.5555 7.2293 15 1 6.4146 0.7468 7.9295 16 6 2.2146 1.7643 -1.4208 17 6 2.5652 0.8512 -2.3978 18 6 2.7482 1.2700 -3.7021 19 6 2.5905 2.6065 -4.0280 20 9 2.7737 3.0178 -5.3018 21 6 2.2445 3.5210 -3.0476 22 6 2.0565 3.0989 -1.7452 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 4.0241 0.5694 0.2075 27 1 3.8024 2.2590 0.7209 28 1 5.4239 0.0440 2.5371 29 1 5.2027 1.7337 3.0509 30 1 7.8940 0.4841 5.2324 31 1 2.6921 -0.1904 -2.1425 32 1 3.0180 0.5559 -4.4659 33 1 2.1216 4.5637 -3.3006 34 1 1.7862 3.8119 -0.9804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600557203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -92.984508 kcal Electronic energy + Delta-G solvation = -17503.487862 eV Core-core repulsion = 14441.181402 eV Total energy + Delta-G solvation = -3062.306460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.92859 -40.62961 -38.46082 -35.28015 -33.66108 -32.12195 -30.67905 -30.16666 -27.34780 -25.46098 -24.56670 -23.98582 -22.01519 -18.74247 -18.65943 -17.98518 -17.71146 -17.11872 -16.63696 -16.61964 -16.25573 -15.83595 -15.50627 -14.88392 -14.57855 -14.54688 -14.46222 -14.26684 -14.21561 -13.78975 -13.50352 -13.04924 -12.75687 -12.65272 -12.47024 -12.20569 -11.88233 -11.82841 -11.51156 -10.74536 -10.70925 -10.63447 -10.09463 -9.64551 -8.39033 -8.32557 -6.45627 0.02979 0.25070 1.01747 1.40823 1.41299 1.56219 2.05128 2.37712 2.53646 2.74338 3.02116 3.24364 3.67643 3.76909 3.93284 3.99503 4.06023 4.29517 4.34025 4.50575 4.53046 4.60699 4.76405 4.90762 4.94075 4.95239 4.96101 4.96492 5.12048 5.23085 5.45373 5.58199 5.87110 5.89930 6.24017 6.62248 7.22501 8.79838 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031051 B = 0.003621 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.537524 B = 7729.839447 C = 8266.907059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.387 6.387 3 C 0.160 3.840 4 H 0.089 0.911 5 C -0.076 4.076 6 S -0.292 6.292 7 C 0.088 3.912 8 C -0.534 4.534 9 H 0.063 0.937 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.977 3.023 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.272 1.272 16 C -0.124 4.124 17 C -0.071 4.071 18 C -0.158 4.158 19 C 0.084 3.916 20 F -0.147 7.147 21 C -0.153 4.153 22 C -0.079 4.079 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.010 0.990 29 H 0.015 0.985 30 H 0.270 0.730 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 4.343 -15.754 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.306 6.306 3 C 0.101 3.899 4 H 0.106 0.894 5 C -0.224 4.224 6 S -0.065 6.065 7 C -0.060 4.060 8 C -0.573 4.573 9 H 0.081 0.919 10 C -0.187 4.187 11 N -0.565 5.565 12 Si 0.801 3.199 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.197 1.197 16 C -0.126 4.126 17 C -0.089 4.089 18 C -0.176 4.176 19 C 0.065 3.935 20 F -0.126 7.126 21 C -0.171 4.171 22 C -0.097 4.097 23 H 0.115 0.885 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.872 3.924 -15.265 20.350 hybrid contribution 1.512 0.288 -0.099 1.543 sum -11.360 4.213 -15.365 19.567 Atomic orbital electron populations 1.22933 0.79579 1.03806 1.00491 1.87978 1.21311 1.26528 1.94754 1.20465 0.92776 0.86058 0.90636 0.89355 1.23482 1.00324 1.04238 0.94362 1.86420 1.18989 1.90075 1.10973 1.20756 0.88758 0.98055 0.98407 1.21027 0.94262 1.46560 0.95424 0.91930 1.25931 0.94415 0.94662 1.03730 1.70070 0.98966 1.48536 1.38976 0.85213 0.78686 0.78191 0.77857 1.18830 1.19881 1.19708 1.20404 1.02208 0.94641 0.95394 1.20965 0.95851 1.00661 0.91414 1.21326 1.03556 0.94625 0.98129 1.17985 1.02599 0.93796 0.79148 1.91483 1.93009 1.91079 1.36986 1.21344 1.02559 1.00856 0.92376 1.21136 0.97290 0.94920 0.96324 0.88519 0.93682 0.92934 0.90758 0.88621 0.97136 0.96695 0.92112 0.84563 0.83266 0.82528 0.82755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.81 113.37 1.23 1.81 16 2 O -0.39 -10.85 9.10 -148.98 -1.36 -12.21 16 3 C 0.16 4.18 2.36 29.85 0.07 4.25 16 4 H 0.09 2.12 7.70 -2.39 -0.02 2.10 16 5 C -0.08 -2.52 5.65 71.98 0.41 -2.11 16 6 S -0.29 -12.74 21.30 -56.49 -1.20 -13.95 16 7 C 0.09 4.74 5.70 71.24 0.41 5.15 16 8 C -0.53 -30.86 9.13 25.60 0.23 -30.63 16 9 H 0.06 3.60 7.71 -2.91 -0.02 3.58 16 10 C 0.01 0.75 5.46 84.65 0.46 1.21 16 11 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 12 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 13 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 C -0.12 -2.76 4.96 -19.86 -0.10 -2.86 16 17 C -0.07 -1.55 9.35 22.26 0.21 -1.34 16 18 C -0.16 -3.15 10.03 22.31 0.22 -2.92 16 19 C 0.08 1.71 7.30 22.38 0.16 1.87 16 20 F -0.15 -3.16 17.27 44.97 0.78 -2.38 16 21 C -0.15 -2.72 10.03 22.31 0.22 -2.49 16 22 C -0.08 -1.45 9.68 22.26 0.22 -1.23 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 0.92 8.08 -2.39 -0.02 0.90 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.14 3.04 7.63 -2.91 -0.02 3.02 16 32 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -65.12 314.71 5.35 -59.77 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.08 Total: 6.83 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 3.74 Total: -29.30 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.36 Total: -12.21 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -12.74 SS G_CDS: -1.20 Total: -13.95 kcal Total: -65.12 5.35 -59.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600557203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.214 kcal (2) G-P(sol) polarization free energy of solvation -65.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds