Wall clock time and date at job start Mon Mar 30 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 120.00852 * 2 1 4 4 C 1.38229 * 120.02156 * 180.29817 * 3 2 1 5 5 C 1.38262 * 120.05298 * 359.71232 * 4 3 2 6 6 C 1.50698 * 119.98904 * 180.02562 * 5 4 3 7 7 S 1.81395 * 109.47546 * 269.98381 * 6 5 4 8 8 O 1.42102 * 109.47207 * 296.38848 * 7 6 5 9 9 C 1.81392 * 103.00096 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.47270 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47157 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00321 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00037 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99511 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00191 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47310 * 59.99616 * 15 13 11 17 17 H 1.48499 * 109.47186 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46899 * 300.00029 * 15 13 11 19 19 C 1.38177 * 120.02678 * 0.02562 * 5 4 3 20 20 C 1.38437 * 120.01912 * 179.73721 * 2 1 3 21 21 F 1.35104 * 120.02166 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.47392 * 270.25756 * 1 2 3 23 23 H 1.08996 * 109.47562 * 30.26554 * 1 2 3 24 24 H 1.09001 * 109.46625 * 150.26552 * 1 2 3 25 25 H 1.07993 * 119.98806 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.96987 * 179.70237 * 4 3 2 27 27 H 1.09006 * 109.46558 * 29.98516 * 6 5 4 28 28 H 1.08999 * 109.47067 * 149.97766 * 6 5 4 29 29 H 1.09005 * 109.47506 * 299.99727 * 9 7 6 30 30 H 1.09002 * 109.47122 * 60.00251 * 9 7 6 31 31 H 1.08997 * 109.46724 * 300.00161 * 10 9 7 32 32 H 1.09002 * 109.47037 * 59.99962 * 10 9 7 33 33 H 0.97005 * 119.99895 * 180.02562 * 14 13 11 34 34 H 1.07997 * 120.01639 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5806 1.1973 -0.0062 5 6 4.2733 0.0007 -0.0065 6 6 5.7803 0.0028 -0.0127 7 16 6.3780 -0.0007 -1.7253 8 8 5.9735 -1.2029 -2.3658 9 6 8.1812 0.0031 -1.5282 10 6 8.8449 0.0013 -2.9068 11 6 10.3430 0.0038 -2.7430 12 1 10.7782 0.0059 -1.7546 13 6 11.1581 0.0022 -3.8551 14 7 10.6282 -0.0020 -5.0587 15 14 13.0150 0.0045 -3.6521 16 1 13.4323 -1.2058 -2.8997 17 1 13.6592 0.0029 -4.9901 18 1 13.4297 1.2191 -2.9050 19 6 3.5844 -1.1970 -0.0010 20 6 2.1996 -1.1987 0.0055 21 9 1.5249 -2.3692 0.0114 22 1 -0.3634 0.0046 1.0277 23 1 -0.3634 0.8875 -0.5179 24 1 -0.3632 -0.8924 -0.5097 25 1 1.6583 2.1322 -0.0004 26 1 4.1199 2.1330 -0.0111 27 1 6.1444 0.8946 0.4975 28 1 6.1469 -0.8854 0.5020 29 1 8.4850 0.8951 -0.9803 30 1 8.4881 -0.8850 -0.9756 31 1 8.5412 -0.8904 -3.4550 32 1 8.5380 0.8895 -3.4590 33 1 11.2016 -0.0035 -5.8411 34 1 4.1256 -2.1316 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600926157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:37 Heat of formation + Delta-G solvation = -79.171765 kcal Electronic energy + Delta-G solvation = -17423.246356 eV Core-core repulsion = 14361.538861 eV Total energy + Delta-G solvation = -3061.707494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.96583 -39.35243 -35.18694 -34.00475 -33.68412 -30.90886 -30.67294 -29.55605 -25.61510 -24.95114 -22.99488 -21.54214 -20.88930 -17.29702 -16.98338 -16.70551 -16.48187 -15.79379 -15.77946 -14.80136 -14.66360 -14.43388 -14.10708 -13.86906 -13.57341 -13.46831 -13.03589 -12.91922 -12.48446 -12.31810 -11.98437 -11.71176 -11.56293 -11.29524 -11.15551 -10.96852 -10.77429 -10.17790 -10.15579 -9.57696 -9.29890 -8.93946 -8.48559 -8.42966 -7.69533 -6.06070 -4.10605 0.91783 1.08643 2.01562 3.11694 3.29396 3.34379 3.36413 3.48787 4.10225 4.20321 4.41270 4.48605 4.59799 4.76067 4.93136 5.15339 5.26993 5.28827 5.34292 5.39270 5.50799 5.68838 5.86523 5.91636 5.96450 6.04181 6.10958 6.19277 6.35884 6.77327 6.78710 7.47010 7.58697 7.88687 8.29799 8.93889 9.53573 11.04502 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050085 B = 0.003316 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.913601 B = 8442.099062 C = 8572.691356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.130 4.130 3 C -0.090 4.090 4 C -0.124 4.124 5 C -0.030 4.030 6 C -0.422 4.422 7 S 1.225 4.775 8 O -0.842 6.842 9 C -0.417 4.417 10 C 0.038 3.962 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.144 4.144 20 C 0.100 3.900 21 F -0.140 7.140 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 6.168 11.694 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.131 4.131 3 C -0.108 4.108 4 C -0.143 4.143 5 C -0.031 4.031 6 C -0.555 4.555 7 S 1.426 4.574 8 O -0.838 6.838 9 C -0.557 4.557 10 C 0.000 4.000 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.164 4.164 20 C 0.081 3.919 21 F -0.118 7.118 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.152 0.848 26 H 0.157 0.843 27 H 0.145 0.855 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.206 6.083 10.685 21.969 hybrid contribution 1.857 -2.175 1.244 3.118 sum -16.349 3.908 11.929 20.612 Atomic orbital electron populations 1.20701 0.90277 1.03304 1.02568 1.19926 0.96967 0.92015 1.04189 1.20897 0.93969 0.96917 0.98997 1.21148 0.94074 0.97830 1.01267 1.18996 0.93583 0.92571 0.97997 1.26916 0.97111 1.08143 1.23328 1.70585 0.89629 1.12735 0.84486 1.93109 1.77692 1.50620 1.62338 1.27630 1.14344 1.06065 1.07646 1.18787 0.95545 0.98150 0.87530 1.21113 0.90776 1.51515 0.92631 0.92522 1.25047 0.99009 0.95130 0.95258 1.69950 1.35485 1.50077 0.97593 0.86596 0.85147 0.78636 0.77268 1.20301 1.21141 1.20074 1.21075 0.92341 0.99685 1.03324 1.17481 0.89781 0.80987 1.03685 1.91471 1.80282 1.46163 1.93930 0.91035 0.90898 0.91333 0.84773 0.84331 0.85454 0.88831 0.87542 0.90873 0.95896 0.95291 0.92686 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.83 36.01 0.35 -0.56 16 2 C -0.13 -1.40 5.89 -104.55 -0.62 -2.02 16 3 C -0.09 -0.82 9.70 -39.59 -0.38 -1.21 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 5 C -0.03 -0.37 5.14 -104.64 -0.54 -0.91 16 6 C -0.42 -5.09 6.05 36.00 0.22 -4.87 16 7 S 1.23 19.20 13.14 -107.50 -1.41 17.79 16 8 O -0.84 -18.78 18.14 -35.23 -0.64 -19.42 16 9 C -0.42 -7.94 5.86 37.16 0.22 -7.72 16 10 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 11 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 15 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 C -0.14 -2.04 9.68 -39.51 -0.38 -2.42 16 20 C 0.10 1.33 7.24 -39.42 -0.29 1.05 16 21 F -0.14 -1.95 16.48 2.25 0.04 -1.91 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 24 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 25 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 26 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.13 1.09 8.09 -51.92 -0.42 0.67 16 28 H 0.09 1.20 8.08 -51.92 -0.42 0.78 16 29 H 0.11 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -35.95 313.38 -8.51 -44.45 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.58 Total: -3.31 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: -2.35 Total: -32.77 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.64 Total: -19.42 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 19.20 SS G_CDS: -1.41 Total: 17.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.95 -8.51 -44.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600926157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.720 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds