Wall clock time and date at job start Mon Mar 30 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 120.00852 * 2 1 4 4 C 1.38229 * 120.02156 * 180.29817 * 3 2 1 5 5 C 1.38262 * 120.05298 * 359.71232 * 4 3 2 6 6 C 1.50698 * 119.98904 * 180.02562 * 5 4 3 7 7 S 1.81395 * 109.47546 * 269.98381 * 6 5 4 8 8 O 1.42102 * 109.47207 * 296.38848 * 7 6 5 9 9 C 1.81392 * 103.00096 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.47270 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47157 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00321 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00037 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99511 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00191 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47310 * 59.99616 * 15 13 11 17 17 H 1.48499 * 109.47186 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46899 * 300.00029 * 15 13 11 19 19 C 1.38177 * 120.02678 * 0.02562 * 5 4 3 20 20 C 1.38437 * 120.01912 * 179.73721 * 2 1 3 21 21 F 1.35104 * 120.02166 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.47392 * 270.25756 * 1 2 3 23 23 H 1.08996 * 109.47562 * 30.26554 * 1 2 3 24 24 H 1.09001 * 109.46625 * 150.26552 * 1 2 3 25 25 H 1.07993 * 119.98806 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.96987 * 179.70237 * 4 3 2 27 27 H 1.09006 * 109.46558 * 29.98516 * 6 5 4 28 28 H 1.08999 * 109.47067 * 149.97766 * 6 5 4 29 29 H 1.09005 * 109.47506 * 299.99727 * 9 7 6 30 30 H 1.09002 * 109.47122 * 60.00251 * 9 7 6 31 31 H 1.08997 * 109.46724 * 300.00161 * 10 9 7 32 32 H 1.09002 * 109.47037 * 59.99962 * 10 9 7 33 33 H 0.97005 * 119.99895 * 180.02562 * 14 13 11 34 34 H 1.07997 * 120.01639 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5806 1.1973 -0.0062 5 6 4.2733 0.0007 -0.0065 6 6 5.7803 0.0028 -0.0127 7 16 6.3780 -0.0007 -1.7253 8 8 5.9735 -1.2029 -2.3658 9 6 8.1812 0.0031 -1.5282 10 6 8.8449 0.0013 -2.9068 11 6 10.3430 0.0038 -2.7430 12 1 10.7782 0.0059 -1.7546 13 6 11.1581 0.0022 -3.8551 14 7 10.6282 -0.0020 -5.0587 15 14 13.0150 0.0045 -3.6521 16 1 13.4323 -1.2058 -2.8997 17 1 13.6592 0.0029 -4.9901 18 1 13.4297 1.2191 -2.9050 19 6 3.5844 -1.1970 -0.0010 20 6 2.1996 -1.1987 0.0055 21 9 1.5249 -2.3692 0.0114 22 1 -0.3634 0.0046 1.0277 23 1 -0.3634 0.8875 -0.5179 24 1 -0.3632 -0.8924 -0.5097 25 1 1.6583 2.1322 -0.0004 26 1 4.1199 2.1330 -0.0111 27 1 6.1444 0.8946 0.4975 28 1 6.1469 -0.8854 0.5020 29 1 8.4850 0.8951 -0.9803 30 1 8.4881 -0.8850 -0.9756 31 1 8.5412 -0.8904 -3.4550 32 1 8.5380 0.8895 -3.4590 33 1 11.2016 -0.0035 -5.8411 34 1 4.1256 -2.1316 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600926157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:37 Heat of formation + Delta-G solvation = -103.163227 kcal Electronic energy + Delta-G solvation = -17424.286703 eV Core-core repulsion = 14361.538861 eV Total energy + Delta-G solvation = -3062.747842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.97850 -40.20269 -36.76847 -35.73136 -34.84187 -32.87147 -31.53542 -30.40988 -27.40205 -26.04092 -23.86906 -23.20147 -21.99644 -18.79118 -18.39522 -18.00460 -17.61966 -16.80929 -16.64142 -16.55260 -16.18444 -15.83419 -15.45556 -14.95192 -14.58507 -14.40379 -14.24244 -14.02416 -13.95141 -13.49522 -13.31291 -12.90638 -12.87705 -12.65004 -12.58268 -12.36067 -12.06494 -11.98340 -11.90808 -11.51971 -10.92740 -10.59457 -9.88467 -9.56037 -9.01428 -8.21659 -6.35200 -0.03357 0.19815 0.81823 1.39714 1.42906 1.51059 1.83223 2.39930 2.61862 2.91295 3.10494 3.20280 3.60590 3.73411 3.96013 4.16263 4.24280 4.29698 4.38895 4.49437 4.66107 4.72497 4.78471 4.91742 5.02603 5.07592 5.18139 5.24147 5.41554 5.42389 5.48319 5.51207 5.76772 5.96070 6.17062 6.79936 7.34336 8.89188 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050085 B = 0.003316 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.913601 B = 8442.099062 C = 8572.691356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.128 4.128 3 C -0.083 4.083 4 C -0.110 4.110 5 C -0.053 4.053 6 C -0.403 4.403 7 S 1.276 4.724 8 O -0.919 6.919 9 C -0.419 4.419 10 C 0.035 3.965 11 C -0.543 4.543 12 H 0.066 0.934 13 C -0.003 4.003 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.256 1.256 19 C -0.174 4.174 20 C 0.066 3.934 21 F -0.154 7.154 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.178 0.822 26 H 0.184 0.816 27 H 0.180 0.820 28 H 0.084 0.916 29 H 0.146 0.854 30 H 0.058 0.942 31 H -0.028 1.028 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.016 9.396 13.727 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.130 4.130 3 C -0.101 4.101 4 C -0.129 4.129 5 C -0.055 4.055 6 C -0.539 4.539 7 S 1.480 4.520 8 O -0.915 6.915 9 C -0.557 4.557 10 C -0.003 4.003 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.201 4.201 14 N -0.573 5.573 15 Si 0.792 3.208 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.180 1.180 19 C -0.194 4.194 20 C 0.047 3.953 21 F -0.133 7.133 22 H 0.103 0.897 23 H 0.117 0.883 24 H 0.075 0.925 25 H 0.195 0.805 26 H 0.201 0.799 27 H 0.197 0.803 28 H 0.102 0.898 29 H 0.164 0.836 30 H 0.077 0.923 31 H -0.010 1.010 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.518 9.307 12.694 24.304 hybrid contribution 1.792 -3.145 0.720 3.690 sum -16.726 6.162 13.414 22.309 Atomic orbital electron populations 1.20795 0.88433 1.04022 1.03646 1.20377 0.98494 0.91570 1.02523 1.21448 0.94050 0.97732 0.96859 1.21698 0.94631 0.98184 0.98366 1.19131 0.93475 0.93091 0.99763 1.26724 0.97255 1.10367 1.19525 1.69584 0.86069 1.10115 0.86219 1.92993 1.78304 1.53124 1.67053 1.27555 1.16978 1.07271 1.03867 1.18654 0.95375 0.95545 0.90748 1.21641 0.92366 1.51067 0.93151 0.91588 1.26057 1.04542 0.94606 0.94873 1.70096 1.37469 1.51233 0.98536 0.85452 0.78574 0.79298 0.77444 1.19954 1.20865 1.18036 1.21140 0.93124 0.99786 1.05386 1.17829 0.89812 0.81734 1.05887 1.91424 1.80420 1.47133 1.94281 0.89693 0.88279 0.92523 0.80499 0.79869 0.80286 0.89755 0.83587 0.92305 1.00987 0.95547 0.92580 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.83 71.24 0.70 -0.85 16 2 C -0.13 -2.50 5.89 -19.82 -0.12 -2.62 16 3 C -0.08 -1.16 9.70 22.27 0.22 -0.94 16 4 C -0.11 -1.64 9.70 22.27 0.22 -1.42 16 5 C -0.05 -1.22 5.14 -19.87 -0.10 -1.32 16 6 C -0.40 -8.74 6.05 71.24 0.43 -8.31 16 7 S 1.28 39.58 13.14 -56.49 -0.74 38.83 16 8 O -0.92 -43.13 18.14 -148.98 -2.70 -45.83 16 9 C -0.42 -15.79 5.86 71.98 0.42 -15.37 16 10 C 0.03 1.84 4.98 29.85 0.15 1.99 16 11 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 12 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 13 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 14 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 15 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 19 C -0.17 -5.08 9.68 22.31 0.22 -4.86 16 20 C 0.07 1.80 7.24 22.38 0.16 1.96 16 21 F -0.15 -4.55 16.48 44.97 0.74 -3.80 16 22 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 23 H 0.10 0.85 8.09 -2.39 -0.02 0.83 16 24 H 0.06 0.92 7.64 -2.39 -0.02 0.91 16 25 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 26 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 27 H 0.18 2.06 8.09 -2.39 -0.02 2.04 16 28 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 29 H 0.15 4.25 8.14 -2.39 -0.02 4.23 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 34 H 0.11 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -84.59 313.38 3.68 -80.91 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.08 Total: 2.89 kcal Atomic # 6 Polarization: -64.94 SS G_CDS: 2.99 Total: -61.95 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.02 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -2.70 Total: -45.83 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.74 Total: -3.80 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 39.58 SS G_CDS: -0.74 Total: 38.83 kcal Total: -84.59 3.68 -80.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600926157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.257 kcal (2) G-P(sol) polarization free energy of solvation -84.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds