Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47080 * 2 1 4 4 C 1.35635 * 125.67935 * 261.50763 * 3 2 1 5 5 C 1.35516 * 108.85330 * 179.89213 * 4 3 2 6 6 Cl 1.73603 * 126.07688 * 180.12094 * 5 4 3 7 7 C 1.39887 * 107.85020 * 0.37180 * 5 4 3 8 8 C 1.37642 * 125.67556 * 81.81981 * 3 2 1 9 9 C 1.46672 * 126.22153 * 359.94100 * 8 3 2 10 10 O 1.21692 * 119.99946 * 5.76734 * 9 8 3 11 11 N 1.34779 * 119.99693 * 185.77248 * 9 8 3 12 12 C 1.46496 * 119.99592 * 185.21382 * 11 9 8 13 13 H 1.09003 * 109.47631 * 34.99671 * 12 11 9 14 14 C 1.53007 * 109.47203 * 275.00104 * 12 11 9 15 15 C 1.50699 * 109.47332 * 155.00331 * 12 11 9 16 16 H 1.08000 * 119.99839 * 34.25566 * 15 12 11 17 17 C 1.37878 * 120.00339 * 214.26911 * 15 12 11 18 18 N 1.31513 * 120.00187 * 183.74560 * 17 15 12 19 19 Si 1.86805 * 119.99691 * 3.74035 * 17 15 12 20 20 H 1.48498 * 109.46959 * 93.53036 * 19 17 15 21 21 H 1.48498 * 109.46870 * 213.53451 * 19 17 15 22 22 H 1.48500 * 109.47265 * 333.53139 * 19 17 15 23 23 H 1.08999 * 109.47476 * 59.99429 * 1 2 3 24 24 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46463 * 299.99465 * 1 2 3 26 26 H 1.08999 * 109.47476 * 120.00571 * 2 1 3 27 27 H 1.09001 * 109.47088 * 240.00688 * 2 1 3 28 28 H 1.07995 * 125.57175 * 0.03923 * 4 3 2 29 29 H 1.08002 * 126.45574 * 179.73778 * 7 5 4 30 30 H 0.97000 * 120.00213 * 5.21761 * 11 9 8 31 31 H 1.09001 * 109.46929 * 295.14318 * 14 12 11 32 32 H 1.09000 * 109.47311 * 55.13997 * 14 12 11 33 33 H 1.08996 * 109.47327 * 175.14246 * 14 12 11 34 34 H 0.96995 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4354 2.0728 -1.0897 5 6 2.8109 3.3159 -0.7021 6 17 3.4146 4.5711 -1.7383 7 6 2.6311 3.4060 0.6823 8 6 2.1359 2.1910 1.1067 9 6 1.7958 1.8279 2.4865 10 8 1.4644 0.6873 2.7514 11 7 1.8502 2.7575 3.4609 12 6 1.6223 2.3709 4.8554 13 1 2.0275 1.3737 5.0270 14 6 0.1198 2.3675 5.1447 15 6 2.3072 3.3554 5.7680 16 1 2.3680 4.3972 5.4901 17 6 2.8566 2.9260 6.9575 18 7 3.3890 3.7958 7.7879 19 14 2.8445 1.1086 7.3896 20 1 4.1192 0.4868 6.9498 21 1 2.6973 0.9502 8.8587 22 1 1.7072 0.4443 6.7037 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 2.4615 1.6954 -2.1012 29 1 2.8411 4.2651 1.3021 30 1 2.0403 3.6824 3.2388 31 1 -0.2693 3.3819 5.0570 32 1 -0.3867 1.7209 4.4282 33 1 -0.0549 1.9974 6.1549 34 1 3.7757 3.4937 8.6245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701261477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -5.304235 kcal Electronic energy + Delta-G solvation = -18508.755144 eV Core-core repulsion = 15468.127042 eV Total energy + Delta-G solvation = -3040.628102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.40919 -38.56110 -36.39969 -35.01945 -34.01513 -32.38119 -30.49558 -29.22234 -28.47650 -25.33419 -23.72299 -22.77663 -20.86466 -19.97323 -19.37040 -18.00931 -16.75145 -15.58117 -15.44113 -15.26699 -14.66014 -14.22783 -14.05537 -13.80806 -13.40270 -13.03517 -12.74331 -12.64177 -12.55716 -12.38418 -12.11886 -11.57622 -11.33811 -11.27979 -11.13558 -10.86724 -10.79533 -10.61495 -9.88287 -9.37639 -9.21773 -8.74260 -8.64180 -8.33729 -8.00804 -6.25463 -4.29494 1.60340 2.14544 2.52064 2.92435 3.22964 3.31942 3.38261 3.77343 3.99335 4.29762 4.64129 4.83925 4.97326 5.06360 5.20923 5.24330 5.30087 5.54892 5.61992 5.81693 6.02365 6.06331 6.30408 6.49984 6.51569 6.64711 6.84266 6.89265 7.08239 7.17439 7.34231 7.48772 8.09282 8.51061 8.74167 8.85965 9.35748 10.86196 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.005351 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.714759 B = 5231.501689 C = 6124.470811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.402 5.402 4 C 0.020 3.980 5 C -0.121 4.121 6 Cl -0.058 7.058 7 C -0.136 4.136 8 C -0.020 4.020 9 C 0.573 3.427 10 O -0.562 6.562 11 N -0.687 5.687 12 C 0.233 3.767 13 H 0.052 0.948 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.080 0.920 17 C 0.082 3.918 18 N -0.887 5.887 19 Si 0.872 3.128 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.257 1.257 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.173 0.827 29 H 0.154 0.846 30 H 0.396 0.604 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -4.226 -17.738 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.075 5.075 4 C -0.116 4.116 5 C -0.154 4.154 6 Cl -0.029 7.029 7 C -0.162 4.162 8 C -0.134 4.134 9 C 0.358 3.642 10 O -0.444 6.444 11 N -0.334 5.334 12 C 0.131 3.869 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.569 4.569 16 H 0.098 0.902 17 C -0.123 4.123 18 N -0.523 5.523 19 Si 0.698 3.302 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.181 1.181 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.128 0.872 27 H 0.106 0.894 28 H 0.190 0.810 29 H 0.172 0.828 30 H 0.231 0.769 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.364 -5.271 -17.357 18.449 hybrid contribution 0.318 -0.235 0.039 0.397 sum -3.046 -5.506 -17.318 18.426 Atomic orbital electron populations 1.22069 0.93894 1.03064 1.03019 1.22078 0.96133 0.78975 1.05004 1.44023 1.46140 1.11855 1.05520 1.21591 1.05698 0.91886 0.92437 1.19858 1.12486 0.91223 0.91823 1.98308 1.86943 1.51263 1.66411 1.21267 1.04435 0.97224 0.93249 1.20484 1.12118 0.91615 0.89193 1.17031 0.78374 0.85788 0.82962 1.90731 1.50151 1.20138 1.83386 1.46427 1.68500 1.10614 1.07895 1.19234 0.93061 0.97567 0.77051 0.92986 1.22218 0.98292 1.00101 1.00011 1.21006 1.37021 0.95732 1.03124 0.90170 1.24926 0.93734 0.97710 0.95886 1.69878 1.37829 1.34234 1.10367 0.86916 0.79662 0.85807 0.77807 1.20018 1.20993 1.18125 0.92504 0.90708 0.91085 0.87205 0.89412 0.81010 0.82819 0.76944 0.93340 0.95115 0.92898 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.19 37.16 0.38 -1.38 16 2 C 0.10 1.13 6.12 -4.04 -0.02 1.10 16 3 N -0.40 -5.44 2.76 -112.83 -0.31 -5.76 16 4 C 0.02 0.24 11.34 -16.84 -0.19 0.05 16 5 C -0.12 -1.60 6.66 -39.94 -0.27 -1.86 16 6 Cl -0.06 -0.69 29.30 -51.86 -1.52 -2.21 16 7 C -0.14 -2.00 10.34 -39.09 -0.40 -2.40 16 8 C -0.02 -0.32 6.88 -81.98 -0.56 -0.88 16 9 C 0.57 11.08 7.73 -12.85 -0.10 10.98 16 10 O -0.56 -12.03 14.00 5.20 0.07 -11.96 16 11 N -0.69 -13.83 5.04 -56.24 -0.28 -14.12 16 12 C 0.23 5.44 2.11 -69.08 -0.15 5.29 16 13 H 0.05 1.32 4.71 -51.93 -0.24 1.07 16 14 C -0.15 -3.18 9.46 37.16 0.35 -2.82 16 15 C -0.53 -14.04 9.05 -34.44 -0.31 -14.35 16 16 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 19 Si 0.87 21.09 27.10 -169.99 -4.61 16.48 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.26 -6.10 6.49 56.52 0.37 -5.73 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.98 7.70 -51.92 -0.40 0.58 16 26 H 0.11 1.49 6.68 -51.93 -0.35 1.14 16 27 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 28 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.15 2.10 7.50 -52.49 -0.39 1.70 16 30 H 0.40 7.18 7.55 -40.82 -0.31 6.88 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.05 1.14 8.02 -51.93 -0.42 0.72 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -30.23 305.41 -6.88 -37.11 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.23 Total: 5.02 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.37 Total: -4.12 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.18 Total: -44.93 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.61 Total: 16.48 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.52 Total: -2.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.23 -6.88 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701261477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.807 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds