Wall clock time and date at job start Mon Mar 30 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47080 * 2 1 4 4 C 1.35635 * 125.67935 * 261.50763 * 3 2 1 5 5 C 1.35516 * 108.85330 * 179.89213 * 4 3 2 6 6 Cl 1.73603 * 126.07688 * 180.12094 * 5 4 3 7 7 C 1.39887 * 107.85020 * 0.37180 * 5 4 3 8 8 C 1.37642 * 125.67556 * 81.81981 * 3 2 1 9 9 C 1.46672 * 126.22153 * 359.94100 * 8 3 2 10 10 O 1.21692 * 119.99946 * 5.76734 * 9 8 3 11 11 N 1.34779 * 119.99693 * 185.77248 * 9 8 3 12 12 C 1.46496 * 119.99592 * 185.21382 * 11 9 8 13 13 H 1.09003 * 109.47631 * 34.99671 * 12 11 9 14 14 C 1.53007 * 109.47203 * 275.00104 * 12 11 9 15 15 C 1.50699 * 109.47332 * 155.00331 * 12 11 9 16 16 H 1.08000 * 119.99839 * 34.25566 * 15 12 11 17 17 C 1.37878 * 120.00339 * 214.26911 * 15 12 11 18 18 N 1.31513 * 120.00187 * 183.74560 * 17 15 12 19 19 Si 1.86805 * 119.99691 * 3.74035 * 17 15 12 20 20 H 1.48498 * 109.46959 * 93.53036 * 19 17 15 21 21 H 1.48498 * 109.46870 * 213.53451 * 19 17 15 22 22 H 1.48500 * 109.47265 * 333.53139 * 19 17 15 23 23 H 1.08999 * 109.47476 * 59.99429 * 1 2 3 24 24 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46463 * 299.99465 * 1 2 3 26 26 H 1.08999 * 109.47476 * 120.00571 * 2 1 3 27 27 H 1.09001 * 109.47088 * 240.00688 * 2 1 3 28 28 H 1.07995 * 125.57175 * 0.03923 * 4 3 2 29 29 H 1.08002 * 126.45574 * 179.73778 * 7 5 4 30 30 H 0.97000 * 120.00213 * 5.21761 * 11 9 8 31 31 H 1.09001 * 109.46929 * 295.14318 * 14 12 11 32 32 H 1.09000 * 109.47311 * 55.13997 * 14 12 11 33 33 H 1.08996 * 109.47327 * 175.14246 * 14 12 11 34 34 H 0.96995 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4354 2.0728 -1.0897 5 6 2.8109 3.3159 -0.7021 6 17 3.4146 4.5711 -1.7383 7 6 2.6311 3.4060 0.6823 8 6 2.1359 2.1910 1.1067 9 6 1.7958 1.8279 2.4865 10 8 1.4644 0.6873 2.7514 11 7 1.8502 2.7575 3.4609 12 6 1.6223 2.3709 4.8554 13 1 2.0275 1.3737 5.0270 14 6 0.1198 2.3675 5.1447 15 6 2.3072 3.3554 5.7680 16 1 2.3680 4.3972 5.4901 17 6 2.8566 2.9260 6.9575 18 7 3.3890 3.7958 7.7879 19 14 2.8445 1.1086 7.3896 20 1 4.1192 0.4868 6.9498 21 1 2.6973 0.9502 8.8587 22 1 1.7072 0.4443 6.7037 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 2.4615 1.6954 -2.1012 29 1 2.8411 4.2651 1.3021 30 1 2.0403 3.6824 3.2388 31 1 -0.2693 3.3819 5.0570 32 1 -0.3867 1.7209 4.4282 33 1 -0.0549 1.9974 6.1549 34 1 3.7757 3.4937 8.6245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701261477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:49 Heat of formation + Delta-G solvation = -24.197014 kcal Electronic energy + Delta-G solvation = -18509.574396 eV Core-core repulsion = 15468.127042 eV Total energy + Delta-G solvation = -3041.447355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.50806 -40.10116 -37.37686 -36.72979 -35.09358 -34.29344 -32.11279 -30.22260 -29.77309 -27.33109 -24.77281 -24.09692 -22.22925 -21.36225 -20.85770 -19.38566 -18.44152 -17.19023 -16.93732 -16.46177 -15.92647 -15.53052 -15.40727 -15.06355 -14.85842 -14.57483 -14.25809 -14.09331 -13.77853 -13.60904 -13.26934 -13.04953 -12.96299 -12.78493 -12.48613 -12.34968 -12.13563 -11.85419 -11.78874 -11.22213 -10.93019 -10.82312 -9.92938 -9.69958 -9.19481 -8.38443 -6.45459 0.40942 1.16219 1.29522 1.34614 1.45393 1.47608 1.83021 2.27448 2.35379 2.58282 3.04603 3.76663 3.86379 3.98807 4.11337 4.22908 4.40081 4.44739 4.53422 4.71733 4.76593 4.81835 4.86854 4.96782 5.08029 5.19211 5.32771 5.43833 5.46461 5.69339 5.75974 6.10567 6.14429 6.59346 6.83375 7.18879 7.34564 8.76605 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.005351 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.714759 B = 5231.501689 C = 6124.470811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 N -0.402 5.402 4 C 0.051 3.949 5 C -0.139 4.139 6 Cl -0.046 7.046 7 C -0.132 4.132 8 C -0.056 4.056 9 C 0.574 3.426 10 O -0.587 6.587 11 N -0.692 5.692 12 C 0.238 3.762 13 H 0.035 0.965 14 C -0.140 4.140 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.033 3.967 18 N -0.930 5.930 19 Si 0.927 3.073 20 H -0.275 1.275 21 H -0.275 1.275 22 H -0.251 1.251 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.033 0.967 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.216 0.784 29 H 0.155 0.845 30 H 0.404 0.596 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 -5.444 -20.326 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.075 5.075 4 C -0.087 4.087 5 C -0.172 4.172 6 Cl -0.018 7.018 7 C -0.158 4.158 8 C -0.170 4.170 9 C 0.362 3.638 10 O -0.471 6.471 11 N -0.340 5.340 12 C 0.135 3.865 13 H 0.053 0.947 14 C -0.199 4.199 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.167 4.167 18 N -0.568 5.568 19 Si 0.751 3.249 20 H -0.200 1.200 21 H -0.201 1.201 22 H -0.175 1.175 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.149 0.851 28 H 0.232 0.768 29 H 0.173 0.827 30 H 0.240 0.760 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.677 -6.485 -19.960 21.307 hybrid contribution 0.421 0.211 0.681 0.828 sum -3.256 -6.274 -19.280 20.535 Atomic orbital electron populations 1.22020 0.93504 1.03991 1.01875 1.22264 0.96443 0.77994 1.05851 1.44243 1.45726 1.12419 1.05081 1.22271 1.02161 0.90881 0.93386 1.19956 1.13503 0.92371 0.91375 1.98314 1.86832 1.50894 1.65732 1.21420 1.03284 0.96736 0.94391 1.19964 1.15452 0.93116 0.88442 1.17337 0.77351 0.85004 0.84072 1.90706 1.51221 1.21024 1.84115 1.46138 1.69445 1.11392 1.07051 1.18969 0.93699 0.95613 0.78234 0.94669 1.22109 0.96970 1.00768 1.00073 1.21175 1.36568 0.95281 1.03569 0.92623 1.25616 0.93739 1.01381 0.95990 1.69980 1.39583 1.36099 1.11131 0.86042 0.79668 0.81268 0.77929 1.20043 1.20087 1.17476 0.90892 0.88817 0.94796 0.89830 0.85062 0.76770 0.82722 0.76029 0.92597 0.94303 0.93095 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.19 71.98 0.73 -2.31 16 2 C 0.09 1.91 6.12 86.38 0.53 2.44 16 3 N -0.40 -9.91 2.76 -510.88 -1.41 -11.33 16 4 C 0.05 1.01 11.34 83.48 0.95 1.96 16 5 C -0.14 -3.33 6.66 22.04 0.15 -3.19 16 6 Cl -0.05 -0.99 29.30 -2.72 -0.08 -1.07 16 7 C -0.13 -3.73 10.34 22.59 0.23 -3.50 16 8 C -0.06 -1.77 6.88 40.35 0.28 -1.49 16 9 C 0.57 22.30 7.73 86.45 0.67 22.96 16 10 O -0.59 -25.31 14.00 -4.32 -0.06 -25.38 16 11 N -0.69 -28.22 5.04 -450.07 -2.27 -30.49 16 12 C 0.24 11.22 2.11 44.25 0.09 11.31 16 13 H 0.04 1.79 4.71 -2.39 -0.01 1.78 16 14 C -0.14 -6.01 9.46 71.98 0.68 -5.33 16 15 C -0.53 -28.48 9.05 25.60 0.23 -28.25 16 16 H 0.06 3.21 8.06 -2.91 -0.02 3.19 16 17 C 0.03 1.86 5.47 84.66 0.46 2.32 16 18 N -0.93 -55.24 13.96 21.45 0.30 -54.94 16 19 Si 0.93 43.84 27.10 68.60 1.86 45.70 16 20 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.25 -11.52 6.49 99.48 0.65 -10.88 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 0.91 7.70 -2.38 -0.02 0.89 16 26 H 0.08 2.19 6.68 -2.39 -0.02 2.17 16 27 H 0.13 1.52 8.11 -2.39 -0.02 1.50 16 28 H 0.22 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.16 4.18 7.50 -2.91 -0.02 4.16 16 30 H 0.40 14.97 7.55 -92.71 -0.70 14.27 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.57 8.07 -2.39 -0.02 1.56 16 33 H 0.05 2.16 8.02 -2.39 -0.02 2.14 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -66.08 305.41 3.70 -62.38 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.36 Total: 18.18 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.00 Total: -3.07 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.38 Total: -96.75 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.86 Total: 45.70 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -66.08 3.70 -62.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701261477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.187 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds