Wall clock time and date at job start Mon Mar 30 2020 01:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.36878 * 119.99925 * 261.54500 * 3 2 1 5 5 H 1.08004 * 119.99590 * 202.52860 * 4 3 2 6 6 C 1.39009 * 120.00497 * 22.53089 * 4 3 2 7 7 N 1.31398 * 119.99727 * 26.03908 * 6 4 3 8 8 Si 1.86800 * 119.99959 * 206.04412 * 6 4 3 9 9 H 1.48500 * 109.47035 * 89.99862 * 8 6 4 10 10 H 1.48502 * 109.46606 * 209.99546 * 8 6 4 11 11 H 1.48498 * 109.47104 * 329.99671 * 8 6 4 12 12 C 1.34776 * 119.99925 * 81.54430 * 3 2 1 13 13 O 1.21744 * 120.00078 * 178.94975 * 12 3 2 14 14 C 1.46538 * 120.00020 * 358.94770 * 12 3 2 15 15 C 1.38017 * 126.22892 * 350.77521 * 14 12 3 16 16 C 1.39858 * 107.09420 * 179.97438 * 15 14 12 17 17 Cl 1.73599 * 126.06743 * 180.02562 * 16 15 14 18 18 C 1.35555 * 107.86361 * 0.02562 * 16 15 14 19 19 N 1.35678 * 108.86304 * 359.75267 * 18 16 15 20 20 C 1.46497 * 125.68228 * 180.26956 * 19 18 16 21 21 C 1.53005 * 109.47154 * 264.63648 * 20 19 18 22 22 H 1.09000 * 109.47152 * 307.96631 * 1 2 3 23 23 H 1.08994 * 109.47444 * 67.97238 * 1 2 3 24 24 H 1.09005 * 109.46640 * 187.96741 * 1 2 3 25 25 H 1.08997 * 109.47371 * 120.00351 * 2 1 3 26 26 H 1.09006 * 109.47279 * 240.00589 * 2 1 3 27 27 H 0.96993 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08004 * 126.45488 * 0.02562 * 15 14 12 29 29 H 1.08003 * 125.56445 * 179.97438 * 18 16 15 30 30 H 1.09001 * 109.46966 * 24.63456 * 20 19 18 31 31 H 1.09004 * 109.47431 * 144.63115 * 20 19 18 32 32 H 1.08993 * 109.47176 * 65.06949 * 21 20 19 33 33 H 1.08999 * 109.46928 * 185.07646 * 21 20 19 34 34 H 1.09001 * 109.46819 * 305.07295 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4107 1.9684 -1.1725 5 1 3.0892 2.8085 -1.1551 6 6 1.9359 1.4835 -2.3857 7 7 0.7831 0.8551 -2.4361 8 14 2.9369 1.7253 -3.9442 9 1 3.8553 0.5726 -4.1265 10 1 2.0223 1.8186 -5.1104 11 1 3.7289 2.9767 -3.8347 12 6 2.0810 2.0738 1.1545 13 8 2.5048 3.2151 1.1575 14 6 1.6392 1.4530 2.4062 15 6 0.9777 0.2481 2.5301 16 6 0.7510 0.0419 3.8947 17 17 -0.0479 -1.3271 4.6027 18 6 1.2658 1.1009 4.5664 19 7 1.8130 1.9630 3.6730 20 6 2.4762 3.2273 4.0015 21 6 1.4734 4.3763 3.8780 22 1 -0.3633 0.6322 0.8102 23 1 -0.3634 0.3854 -0.9526 24 1 -0.3633 -1.0178 0.1425 25 1 1.8933 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 0.4520 0.5164 -3.2826 28 1 0.6900 -0.4118 1.7250 29 1 1.2468 1.2345 5.6379 30 1 2.8553 3.1841 5.0226 31 1 3.3049 3.3926 3.3130 32 1 0.6917 4.2586 4.6282 33 1 1.9870 5.3250 4.0340 34 1 1.0274 4.3639 2.8835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701262007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:43 Heat of formation + Delta-G solvation = 41.978747 kcal Electronic energy + Delta-G solvation = -19288.819306 eV Core-core repulsion = 16250.241548 eV Total energy + Delta-G solvation = -3038.577759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03326 -38.12516 -36.11002 -35.32932 -33.58228 -32.04994 -30.11725 -28.66997 -28.42134 -25.07377 -23.20948 -22.39166 -21.30427 -20.35760 -18.59257 -17.03540 -16.53894 -15.62427 -14.85853 -14.69054 -14.29435 -14.04138 -13.94875 -13.44611 -13.25798 -12.96395 -12.39276 -12.32322 -12.03941 -11.82458 -11.42272 -11.22552 -11.12283 -10.98511 -10.85025 -10.74213 -10.44299 -10.40328 -10.07869 -9.84426 -9.05165 -8.51169 -8.11971 -7.74504 -7.66014 -6.39500 -3.91424 2.12879 2.52899 2.96346 3.16441 3.21570 3.25241 3.40559 4.07740 4.28785 4.81366 4.98791 5.03766 5.23165 5.35071 5.54581 5.60368 5.72551 5.89724 6.02281 6.13152 6.31095 6.39603 6.47171 6.51746 6.62587 6.80308 7.02992 7.15014 7.36042 7.37511 7.57822 7.91475 8.06531 8.47317 9.09917 9.31069 9.91752 10.54235 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.006734 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.262275 B = 4157.140911 C = 5226.559315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.110 3.890 3 N -0.413 5.413 4 C -0.309 4.309 5 H 0.103 0.897 6 C 0.038 3.962 7 N -0.850 5.850 8 Si 0.922 3.078 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.500 3.500 13 O -0.596 6.596 14 C 0.011 3.989 15 C -0.184 4.184 16 C -0.122 4.122 17 Cl -0.070 7.070 18 C 0.000 4.000 19 N -0.408 5.408 20 C 0.107 3.893 21 C -0.161 4.161 22 H 0.044 0.956 23 H 0.122 0.878 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.270 0.730 28 H 0.185 0.815 29 H 0.165 0.835 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -2.092 10.128 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.013 4.013 3 N -0.128 5.128 4 C -0.437 4.437 5 H 0.121 0.879 6 C -0.167 4.167 7 N -0.487 5.487 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.193 1.193 12 C 0.290 3.710 13 O -0.484 6.484 14 C -0.104 4.104 15 C -0.209 4.209 16 C -0.155 4.155 17 Cl -0.042 7.042 18 C -0.135 4.135 19 N -0.083 5.083 20 C -0.014 4.014 21 C -0.218 4.218 22 H 0.063 0.937 23 H 0.140 0.860 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.202 0.798 29 H 0.182 0.818 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.004 -1.404 10.065 10.163 hybrid contribution 0.137 -0.233 -0.509 0.577 sum 0.133 -1.638 9.556 9.696 Atomic orbital electron populations 1.22747 0.96006 0.99433 1.06274 1.21763 0.95164 0.83633 1.00776 1.43431 1.53443 1.10477 1.05498 1.19648 1.25381 1.17029 0.81643 0.87902 1.25344 0.94899 0.97023 0.99439 1.69844 1.15055 1.36858 1.26985 0.86001 0.79693 0.79126 0.80384 1.20220 1.20949 1.19282 1.16695 0.86184 0.85656 0.82505 1.90613 1.53218 1.18164 1.86414 1.20704 1.07747 0.95831 0.86104 1.22720 1.04504 0.97966 0.95669 1.19959 1.09421 0.92425 0.93704 1.98272 1.79119 1.42890 1.83890 1.21429 1.04895 0.91896 0.95264 1.43983 1.42241 1.16927 1.05124 1.21906 0.96832 0.81023 1.01656 1.22053 0.98981 0.97192 1.03618 0.93744 0.86042 0.94421 0.92350 0.90475 0.91943 0.79844 0.81781 0.90152 0.87700 0.93034 0.91187 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.94 8.06 37.16 0.30 -3.64 16 2 C 0.11 2.43 4.80 -4.04 -0.02 2.41 16 3 N -0.41 -10.42 2.62 -116.34 -0.31 -10.72 16 4 C -0.31 -8.30 9.18 -15.01 -0.14 -8.44 16 5 H 0.10 2.90 7.49 -52.48 -0.39 2.51 16 6 C 0.04 0.96 4.68 -17.45 -0.08 0.88 16 7 N -0.85 -21.20 8.93 55.50 0.50 -20.70 16 8 Si 0.92 19.70 29.63 -169.99 -5.04 14.66 16 9 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 C 0.50 12.39 7.46 -12.92 -0.10 12.29 16 13 O -0.60 -15.92 13.87 5.15 0.07 -15.85 16 14 C 0.01 0.23 6.61 -81.99 -0.54 -0.32 16 15 C -0.18 -3.54 7.19 -39.06 -0.28 -3.82 16 16 C -0.12 -2.06 6.66 -39.93 -0.27 -2.33 16 17 Cl -0.07 -1.03 29.30 -51.86 -1.52 -2.55 16 18 C 0.00 0.00 11.35 -16.81 -0.19 -0.19 16 19 N -0.41 -7.23 2.76 -112.80 -0.31 -7.54 16 20 C 0.11 1.62 6.07 -4.04 -0.02 1.59 16 21 C -0.16 -2.35 10.10 37.16 0.38 -1.97 16 22 H 0.04 0.95 6.04 -51.93 -0.31 0.64 16 23 H 0.12 2.88 5.24 -51.93 -0.27 2.60 16 24 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 25 H 0.06 1.18 5.16 -51.93 -0.27 0.92 16 26 H 0.08 1.77 6.77 -51.93 -0.35 1.42 16 27 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 28 H 0.18 3.51 3.01 -52.48 -0.16 3.35 16 29 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 30 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.10 1.81 6.89 -51.93 -0.36 1.46 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.40 7.47 -51.93 -0.39 1.02 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -28.42 287.48 -6.98 -35.40 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.74 Total: 6.50 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.96 Total: -3.53 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.12 Total: -38.97 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.07 Total: -15.85 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.04 Total: 14.66 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.52 Total: -2.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.42 -6.98 -35.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701262007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.382 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds