Wall clock time and date at job start Mon Mar 30 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.36878 * 119.99925 * 261.54500 * 3 2 1 5 5 H 1.08004 * 119.99590 * 202.52860 * 4 3 2 6 6 C 1.39009 * 120.00497 * 22.53089 * 4 3 2 7 7 N 1.31398 * 119.99727 * 26.03908 * 6 4 3 8 8 Si 1.86800 * 119.99959 * 206.04412 * 6 4 3 9 9 H 1.48500 * 109.47035 * 89.99862 * 8 6 4 10 10 H 1.48502 * 109.46606 * 209.99546 * 8 6 4 11 11 H 1.48498 * 109.47104 * 329.99671 * 8 6 4 12 12 C 1.34776 * 119.99925 * 81.54430 * 3 2 1 13 13 O 1.21744 * 120.00078 * 178.94975 * 12 3 2 14 14 C 1.46538 * 120.00020 * 358.94770 * 12 3 2 15 15 C 1.38017 * 126.22892 * 350.77521 * 14 12 3 16 16 C 1.39858 * 107.09420 * 179.97438 * 15 14 12 17 17 Cl 1.73599 * 126.06743 * 180.02562 * 16 15 14 18 18 C 1.35555 * 107.86361 * 0.02562 * 16 15 14 19 19 N 1.35678 * 108.86304 * 359.75267 * 18 16 15 20 20 C 1.46497 * 125.68228 * 180.26956 * 19 18 16 21 21 C 1.53005 * 109.47154 * 264.63648 * 20 19 18 22 22 H 1.09000 * 109.47152 * 307.96631 * 1 2 3 23 23 H 1.08994 * 109.47444 * 67.97238 * 1 2 3 24 24 H 1.09005 * 109.46640 * 187.96741 * 1 2 3 25 25 H 1.08997 * 109.47371 * 120.00351 * 2 1 3 26 26 H 1.09006 * 109.47279 * 240.00589 * 2 1 3 27 27 H 0.96993 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08004 * 126.45488 * 0.02562 * 15 14 12 29 29 H 1.08003 * 125.56445 * 179.97438 * 18 16 15 30 30 H 1.09001 * 109.46966 * 24.63456 * 20 19 18 31 31 H 1.09004 * 109.47431 * 144.63115 * 20 19 18 32 32 H 1.08993 * 109.47176 * 65.06949 * 21 20 19 33 33 H 1.08999 * 109.46928 * 185.07646 * 21 20 19 34 34 H 1.09001 * 109.46819 * 305.07295 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4107 1.9684 -1.1725 5 1 3.0892 2.8085 -1.1551 6 6 1.9359 1.4835 -2.3857 7 7 0.7831 0.8551 -2.4361 8 14 2.9369 1.7253 -3.9442 9 1 3.8553 0.5726 -4.1265 10 1 2.0223 1.8186 -5.1104 11 1 3.7289 2.9767 -3.8347 12 6 2.0810 2.0738 1.1545 13 8 2.5048 3.2151 1.1575 14 6 1.6392 1.4530 2.4062 15 6 0.9777 0.2481 2.5301 16 6 0.7510 0.0419 3.8947 17 17 -0.0479 -1.3271 4.6027 18 6 1.2658 1.1009 4.5664 19 7 1.8130 1.9630 3.6730 20 6 2.4762 3.2273 4.0015 21 6 1.4734 4.3763 3.8780 22 1 -0.3633 0.6322 0.8102 23 1 -0.3634 0.3854 -0.9526 24 1 -0.3633 -1.0178 0.1425 25 1 1.8933 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 0.4520 0.5164 -3.2826 28 1 0.6900 -0.4118 1.7250 29 1 1.2468 1.2345 5.6379 30 1 2.8553 3.1841 5.0226 31 1 3.3049 3.3926 3.3130 32 1 0.6917 4.2586 4.6282 33 1 1.9870 5.3250 4.0340 34 1 1.0274 4.3639 2.8835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701262007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:42 Heat of formation + Delta-G solvation = 26.359216 kcal Electronic energy + Delta-G solvation = -19289.496620 eV Core-core repulsion = 16250.241548 eV Total energy + Delta-G solvation = -3039.255072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.47970 -39.91573 -37.44197 -37.07286 -35.00179 -33.84466 -31.88234 -30.06842 -29.91937 -26.93967 -24.49151 -24.14388 -22.96403 -21.78378 -20.08834 -18.91164 -18.12097 -17.36937 -16.41165 -16.31292 -15.99618 -15.56116 -15.33690 -15.15638 -14.73380 -14.41750 -13.91945 -13.84858 -13.57354 -13.24464 -13.03281 -12.87908 -12.80234 -12.38793 -12.28128 -12.14651 -12.09385 -12.07641 -11.62669 -11.56687 -10.94637 -10.39750 -9.70810 -9.46549 -9.08735 -8.29775 -5.92678 0.62140 1.25496 1.41617 1.44716 1.55482 1.62192 2.01513 2.32937 2.47394 3.08642 3.12699 3.83892 3.94398 4.08120 4.15914 4.32241 4.40791 4.41229 4.68009 4.76192 4.77907 4.82079 4.96582 5.01332 5.16172 5.23623 5.36511 5.41952 5.59878 5.89954 6.03534 6.12889 6.29872 6.58241 7.16080 7.40815 8.02051 8.61978 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.006734 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.262275 B = 4157.140911 C = 5226.559315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.429 5.429 4 C -0.352 4.352 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.860 5.860 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.491 3.509 13 O -0.631 6.631 14 C -0.034 4.034 15 C -0.175 4.175 16 C -0.139 4.139 17 Cl -0.047 7.047 18 C 0.034 3.966 19 N -0.409 5.409 20 C 0.102 3.898 21 C -0.153 4.153 22 H 0.035 0.965 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.277 0.723 28 H 0.181 0.819 29 H 0.213 0.787 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -3.187 12.116 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.006 4.006 3 N -0.145 5.145 4 C -0.480 4.480 5 H 0.091 0.909 6 C -0.193 4.193 7 N -0.496 5.496 8 Si 0.809 3.191 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.282 3.718 13 O -0.521 6.521 14 C -0.148 4.148 15 C -0.201 4.201 16 C -0.172 4.172 17 Cl -0.019 7.019 18 C -0.103 4.103 19 N -0.083 5.083 20 C -0.018 4.018 21 C -0.211 4.211 22 H 0.054 0.946 23 H 0.115 0.885 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.198 0.802 29 H 0.229 0.771 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.430 -2.520 12.045 12.313 hybrid contribution 0.205 0.088 -0.987 1.012 sum -0.225 -2.432 11.057 11.324 Atomic orbital electron populations 1.22563 0.95175 1.00893 1.04465 1.21810 0.95714 0.82270 1.00841 1.43610 1.54012 1.11530 1.05325 1.19520 1.26955 1.18069 0.83418 0.90906 1.26039 0.95482 0.96368 1.01435 1.69941 1.15223 1.36435 1.27997 0.85073 0.78337 0.78810 0.76911 1.19083 1.19826 1.20208 1.17291 0.85178 0.85487 0.83811 1.90561 1.54544 1.19718 1.87293 1.20184 1.11040 0.97440 0.86120 1.22700 1.03301 0.97003 0.97073 1.20013 1.10406 0.93918 0.92891 1.98281 1.78675 1.41686 1.83247 1.22183 1.01290 0.89985 0.96817 1.44218 1.42019 1.17747 1.04271 1.22105 0.95920 0.80233 1.03538 1.21985 0.99514 0.98238 1.01332 0.94563 0.88468 0.91363 0.90551 0.91845 0.91279 0.80239 0.77083 0.85075 0.90751 0.90736 0.89100 0.95444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.32 8.06 71.98 0.58 -6.74 16 2 C 0.12 5.24 4.80 86.38 0.41 5.66 16 3 N -0.43 -22.66 2.62 -640.19 -1.68 -24.34 16 4 C -0.35 -19.92 9.18 84.09 0.77 -19.15 16 5 H 0.07 4.44 7.49 -2.91 -0.02 4.41 16 6 C 0.01 0.59 4.68 84.94 0.40 0.99 16 7 N -0.86 -43.51 8.93 21.68 0.19 -43.31 16 8 Si 0.99 41.15 29.63 68.60 2.03 43.18 16 9 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 C 0.49 25.51 7.46 86.41 0.64 26.16 16 13 O -0.63 -35.86 13.87 -4.49 -0.06 -35.92 16 14 C -0.03 -1.43 6.61 40.34 0.27 -1.17 16 15 C -0.18 -6.57 7.19 22.61 0.16 -6.40 16 16 C -0.14 -4.33 6.66 22.04 0.15 -4.19 16 17 Cl -0.05 -1.24 29.30 -2.72 -0.08 -1.32 16 18 C 0.03 0.92 11.35 83.48 0.95 1.87 16 19 N -0.41 -13.79 2.76 -510.80 -1.41 -15.20 16 20 C 0.10 2.93 6.07 86.38 0.52 3.45 16 21 C -0.15 -4.31 10.10 71.98 0.73 -3.58 16 22 H 0.04 1.56 6.04 -2.39 -0.01 1.55 16 23 H 0.10 4.67 5.24 -2.39 -0.01 4.66 16 24 H 0.07 2.40 8.05 -2.38 -0.02 2.38 16 25 H 0.08 3.12 5.16 -2.39 -0.01 3.11 16 26 H 0.06 2.98 6.77 -2.38 -0.02 2.96 16 27 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 28 H 0.18 6.72 3.01 -2.91 -0.01 6.71 16 29 H 0.21 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.13 2.42 8.12 -2.39 -0.02 2.41 16 31 H 0.07 2.62 6.89 -2.39 -0.02 2.60 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.03 1.03 7.47 -2.39 -0.02 1.01 16 Total: -1.00 -65.44 287.48 5.70 -59.74 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.13 Total: 20.29 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.58 Total: -3.11 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.90 Total: -82.85 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.06 Total: -35.92 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -65.44 5.70 -59.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701262007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.095 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds