Wall clock time and date at job start Mon Mar 30 2020 01:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47093 * 2 1 4 4 N 1.46503 * 109.46891 * 120.00023 * 2 1 3 5 5 C 1.36759 * 127.13895 * 299.97370 * 4 2 1 6 6 N 1.30299 * 107.31730 * 180.02562 * 5 4 2 7 7 N 1.28524 * 110.08083 * 359.97438 * 6 5 4 8 8 C 1.31287 * 109.85335 * 0.02562 * 7 6 5 9 9 S 1.76208 * 126.48246 * 179.97438 * 8 7 6 10 10 C 1.80999 * 100.00145 * 0.02562 * 9 8 7 11 11 C 1.50694 * 109.47200 * 179.97438 * 10 9 8 12 12 O 1.21299 * 120.00034 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00110 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00102 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99934 * 359.97438 * 14 13 11 16 16 C 1.38955 * 120.00016 * 179.97438 * 14 13 11 17 17 N 1.31405 * 119.99901 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99920 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47148 * 89.99608 * 18 16 14 20 20 H 1.48501 * 109.46993 * 209.99921 * 18 16 14 21 21 H 1.48500 * 109.46843 * 329.99549 * 18 16 14 22 22 H 1.08996 * 109.47422 * 300.00200 * 1 2 3 23 23 H 1.09000 * 109.46608 * 60.00642 * 1 2 3 24 24 H 1.09005 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47057 * 239.99360 * 2 1 3 26 26 H 1.09003 * 109.47135 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47130 * 299.99682 * 3 2 1 28 28 H 1.08996 * 109.47150 * 59.99633 * 3 2 1 29 29 H 1.07993 * 126.34451 * 0.02562 * 5 4 2 30 30 H 1.09002 * 109.46667 * 300.00106 * 10 9 8 31 31 H 1.09000 * 109.46986 * 60.00137 * 10 9 8 32 32 H 0.97001 * 120.00020 * 359.97438 * 13 11 10 33 33 H 0.96999 * 120.00107 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7800 -0.3528 2.4998 6 7 2.3971 -1.2250 3.2456 7 7 3.0043 -2.0850 2.5083 8 6 2.8059 -1.8050 1.2411 9 16 3.4370 -2.6983 -0.1405 10 6 4.3560 -3.9990 0.7194 11 6 5.0001 -4.9117 -0.2921 12 8 4.8527 -4.7029 -1.4779 13 7 5.7407 -5.9593 0.1207 14 6 6.3271 -6.7893 -0.7996 15 1 6.1951 -6.6038 -1.8554 16 6 7.0911 -7.8691 -0.3739 17 7 7.6527 -8.6649 -1.2560 18 14 7.3187 -8.1901 1.4521 19 1 6.2360 -9.0838 1.9363 20 1 8.6350 -8.8386 1.6804 21 1 7.2660 -6.9032 2.1913 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5140 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.1896 0.4823 2.8469 30 1 5.1265 -3.5472 1.3442 31 1 3.6727 -4.5743 1.3441 32 1 5.8595 -6.1256 1.0689 33 1 8.1863 -9.4184 -0.9589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701298721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:31 Heat of formation + Delta-G solvation = 42.408199 kcal Electronic energy + Delta-G solvation = -17786.488495 eV Core-core repulsion = 14782.265817 eV Total energy + Delta-G solvation = -3004.222679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.89972 -38.42922 -36.88061 -34.14806 -31.84629 -31.69937 -30.79844 -29.42142 -27.81488 -24.66644 -23.99425 -22.63819 -21.18062 -19.61339 -18.64868 -17.84819 -16.20560 -16.17477 -16.05413 -15.51398 -14.91792 -14.71656 -14.71047 -13.75447 -13.63798 -13.39926 -13.17777 -12.83050 -12.74712 -12.28788 -12.09608 -11.99403 -11.83302 -11.39032 -11.22557 -10.84638 -10.63094 -10.39611 -10.19192 -10.05525 -10.01924 -9.68879 -8.81603 -8.30476 -7.52084 -6.40140 -3.92748 1.13952 1.61007 2.21601 2.47028 2.80646 3.01205 3.06195 3.14049 3.53854 4.04636 4.07054 4.38701 4.39622 4.47314 4.56770 4.99862 5.03534 5.07355 5.11049 5.18599 5.29184 5.46768 5.50005 5.58922 5.63861 5.65994 5.79611 5.95110 6.64813 7.43909 8.00071 8.43766 8.60197 8.81516 9.29570 9.62624 10.71879 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.004068 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.407953 B = 6882.163498 C = 7460.513820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 C -0.162 4.162 4 N -0.461 5.461 5 C 0.152 3.848 6 N -0.291 5.291 7 N -0.301 5.301 8 C 0.148 3.852 9 S 0.077 5.923 10 C -0.130 4.130 11 C 0.460 3.540 12 O -0.568 6.568 13 N -0.572 5.572 14 C -0.310 4.310 15 H 0.123 0.877 16 C 0.047 3.953 17 N -0.873 5.873 18 Si 0.878 3.122 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.266 1.266 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.215 0.785 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.375 0.625 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.052 18.448 5.229 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 C -0.220 4.220 4 N -0.156 5.156 5 C -0.139 4.139 6 N -0.130 5.130 7 N -0.145 5.145 8 C -0.226 4.226 9 S 0.304 5.696 10 C -0.282 4.282 11 C 0.244 3.756 12 O -0.452 6.452 13 N -0.210 5.210 14 C -0.438 4.438 15 H 0.140 0.860 16 C -0.158 4.158 17 N -0.512 5.512 18 Si 0.703 3.297 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.192 1.192 22 H 0.084 0.916 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.128 0.872 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.232 0.768 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.208 0.792 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.635 17.857 4.460 22.326 hybrid contribution -0.064 0.119 1.787 1.792 sum -12.699 17.976 6.247 22.879 Atomic orbital electron populations 1.22181 0.92578 1.03687 1.03548 1.21607 0.95892 0.94226 0.85918 1.22180 1.02619 0.93647 1.03550 1.46816 1.38661 1.21907 1.08236 1.26460 1.04532 1.03129 0.79738 1.73903 1.09832 1.02374 1.26845 1.74708 1.21067 1.21116 0.97643 1.27671 1.00099 0.93362 1.01512 1.86105 1.59615 1.27091 0.96827 1.23679 1.03388 0.98714 1.02440 1.18773 0.84674 0.83712 0.88399 1.90596 1.64426 1.73475 1.16685 1.42068 1.45255 1.25181 1.08491 1.19459 1.27184 1.05316 0.91870 0.85965 1.25049 0.96452 0.95862 0.98401 1.69612 1.32007 1.15865 1.33722 0.86690 0.79189 0.79213 0.84564 1.19331 1.19924 1.19172 0.91585 0.89910 0.91345 0.87243 0.91346 0.89914 0.91579 0.76825 0.87029 0.87025 0.79161 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.26 37.16 0.34 -0.60 16 2 C 0.13 1.00 3.60 -67.93 -0.24 0.75 16 3 C -0.16 -0.94 9.26 37.16 0.34 -0.60 16 4 N -0.46 -5.28 2.66 -111.05 -0.29 -5.58 16 5 C 0.15 1.70 11.91 -88.95 -1.06 0.64 16 6 N -0.29 -4.52 12.17 29.90 0.36 -4.16 16 7 N -0.30 -5.13 11.60 30.68 0.36 -4.77 16 8 C 0.15 2.23 8.07 -88.34 -0.71 1.52 16 9 S 0.08 1.23 20.59 -107.50 -2.21 -0.98 16 10 C -0.13 -2.29 5.72 36.00 0.21 -2.09 16 11 C 0.46 10.41 7.80 -10.99 -0.09 10.32 16 12 O -0.57 -14.84 15.44 5.54 0.09 -14.75 16 13 N -0.57 -13.57 5.09 -10.96 -0.06 -13.63 16 14 C -0.31 -8.62 10.16 -14.93 -0.15 -8.78 16 15 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 16 C 0.05 1.26 5.50 -17.47 -0.10 1.17 16 17 N -0.87 -25.05 13.96 55.50 0.77 -24.28 16 18 Si 0.88 19.22 27.74 -169.99 -4.71 14.51 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 22 H 0.07 0.32 7.99 -51.93 -0.41 -0.10 16 23 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.11 0.94 7.33 -51.93 -0.38 0.56 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.32 7.98 -51.93 -0.41 -0.10 16 29 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.11 1.83 8.14 -51.92 -0.42 1.41 16 31 H 0.11 1.82 8.14 -51.92 -0.42 1.40 16 32 H 0.38 7.88 5.76 -40.82 -0.24 7.64 16 33 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -34.02 302.93 -6.55 -40.57 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.96 Total: 6.16 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.46 Total: 2.34 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 1.14 Total: -52.41 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.09 Total: -14.75 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.51 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.21 Total: -0.98 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.02 -6.55 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701298721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.975 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds