Wall clock time and date at job start Mon Mar 30 2020 01:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47093 * 2 1 4 4 N 1.46503 * 109.46891 * 120.00023 * 2 1 3 5 5 C 1.36759 * 127.13895 * 299.97370 * 4 2 1 6 6 N 1.30299 * 107.31730 * 180.02562 * 5 4 2 7 7 N 1.28524 * 110.08083 * 359.97438 * 6 5 4 8 8 C 1.31287 * 109.85335 * 0.02562 * 7 6 5 9 9 S 1.76208 * 126.48246 * 179.97438 * 8 7 6 10 10 C 1.80999 * 100.00145 * 0.02562 * 9 8 7 11 11 C 1.50694 * 109.47200 * 179.97438 * 10 9 8 12 12 O 1.21299 * 120.00034 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00110 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00102 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99934 * 359.97438 * 14 13 11 16 16 C 1.38955 * 120.00016 * 179.97438 * 14 13 11 17 17 N 1.31405 * 119.99901 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99920 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47148 * 89.99608 * 18 16 14 20 20 H 1.48501 * 109.46993 * 209.99921 * 18 16 14 21 21 H 1.48500 * 109.46843 * 329.99549 * 18 16 14 22 22 H 1.08996 * 109.47422 * 300.00200 * 1 2 3 23 23 H 1.09000 * 109.46608 * 60.00642 * 1 2 3 24 24 H 1.09005 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47057 * 239.99360 * 2 1 3 26 26 H 1.09003 * 109.47135 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47130 * 299.99682 * 3 2 1 28 28 H 1.08996 * 109.47150 * 59.99633 * 3 2 1 29 29 H 1.07993 * 126.34451 * 0.02562 * 5 4 2 30 30 H 1.09002 * 109.46667 * 300.00106 * 10 9 8 31 31 H 1.09000 * 109.46986 * 60.00137 * 10 9 8 32 32 H 0.97001 * 120.00020 * 359.97438 * 13 11 10 33 33 H 0.96999 * 120.00107 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7800 -0.3528 2.4998 6 7 2.3971 -1.2250 3.2456 7 7 3.0043 -2.0850 2.5083 8 6 2.8059 -1.8050 1.2411 9 16 3.4370 -2.6983 -0.1405 10 6 4.3560 -3.9990 0.7194 11 6 5.0001 -4.9117 -0.2921 12 8 4.8527 -4.7029 -1.4779 13 7 5.7407 -5.9593 0.1207 14 6 6.3271 -6.7893 -0.7996 15 1 6.1951 -6.6038 -1.8554 16 6 7.0911 -7.8691 -0.3739 17 7 7.6527 -8.6649 -1.2560 18 14 7.3187 -8.1901 1.4521 19 1 6.2360 -9.0838 1.9363 20 1 8.6350 -8.8386 1.6804 21 1 7.2660 -6.9032 2.1913 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5140 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.1896 0.4823 2.8469 30 1 5.1265 -3.5472 1.3442 31 1 3.6727 -4.5743 1.3441 32 1 5.8595 -6.1256 1.0689 33 1 8.1863 -9.4184 -0.9589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701298721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:31 Heat of formation + Delta-G solvation = 19.650686 kcal Electronic energy + Delta-G solvation = -17787.475335 eV Core-core repulsion = 14782.265817 eV Total energy + Delta-G solvation = -3005.209518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.90587 -40.34738 -37.61223 -36.16596 -33.89386 -32.49879 -31.94768 -30.95317 -28.24662 -26.61622 -24.90564 -23.68314 -22.08235 -21.45321 -20.48462 -18.93709 -17.86894 -17.22887 -17.20389 -16.75672 -16.35696 -16.34930 -15.50505 -15.25614 -14.88505 -14.64493 -14.35991 -13.94494 -13.93420 -13.77883 -13.19530 -12.99109 -12.61460 -12.54363 -12.46565 -12.23299 -12.02130 -11.87959 -11.60856 -11.35759 -11.34059 -11.03258 -10.75163 -10.35081 -8.75425 -8.47400 -6.09657 -0.08023 0.63342 0.91256 1.29757 1.32584 1.42602 1.62852 1.73560 1.76062 2.18730 2.72004 3.07768 3.45441 3.68970 3.86612 3.91787 4.00726 4.04228 4.15783 4.31305 4.40552 4.64617 4.69994 4.78158 4.78674 5.01292 5.20242 5.20778 5.44595 5.83204 5.84861 6.44538 6.74470 7.24184 7.55746 7.73277 8.68955 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.004068 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.407953 B = 6882.163498 C = 7460.513820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 C -0.157 4.157 4 N -0.454 5.454 5 C 0.178 3.822 6 N -0.335 5.335 7 N -0.330 5.330 8 C 0.135 3.865 9 S 0.071 5.929 10 C -0.121 4.121 11 C 0.465 3.535 12 O -0.607 6.607 13 N -0.573 5.573 14 C -0.333 4.333 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.923 5.923 18 Si 0.957 3.043 19 H -0.256 1.256 20 H -0.270 1.270 21 H -0.235 1.235 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.264 0.736 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.392 0.608 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.544 20.612 7.759 26.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 C -0.214 4.214 4 N -0.148 5.148 5 C -0.112 4.112 6 N -0.173 5.173 7 N -0.175 5.175 8 C -0.242 4.242 9 S 0.297 5.703 10 C -0.272 4.272 11 C 0.251 3.749 12 O -0.493 6.493 13 N -0.213 5.213 14 C -0.462 4.462 15 H 0.083 0.917 16 C -0.204 4.204 17 N -0.562 5.562 18 Si 0.776 3.224 19 H -0.180 1.180 20 H -0.195 1.195 21 H -0.159 1.159 22 H 0.102 0.898 23 H 0.123 0.877 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.280 0.720 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.228 0.772 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.147 20.050 6.987 25.514 hybrid contribution 0.284 -0.396 0.876 1.003 sum -13.863 19.654 7.863 25.304 Atomic orbital electron populations 1.22185 0.90571 1.03136 1.05547 1.21969 0.97410 0.94955 0.84083 1.22184 1.01463 0.92247 1.05550 1.47116 1.37384 1.20756 1.09528 1.27350 1.02338 1.02542 0.79006 1.73827 1.11810 1.03785 1.27904 1.74605 1.22107 1.22372 0.98413 1.27341 1.01523 0.94780 1.00519 1.86088 1.59890 1.26925 0.97381 1.23469 1.04169 0.98601 1.01006 1.19598 0.83147 0.83309 0.88812 1.90580 1.65299 1.74367 1.19044 1.41881 1.45606 1.25174 1.08652 1.19053 1.29331 1.07384 0.90402 0.91688 1.26025 0.95112 0.94667 1.04641 1.69767 1.32881 1.16691 1.36900 0.85477 0.79391 0.80546 0.76944 1.17991 1.19523 1.15881 0.89841 0.87693 0.93130 0.88524 0.93133 0.87697 0.89835 0.72003 0.85318 0.85236 0.77194 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.26 71.98 0.67 -0.65 16 2 C 0.12 1.56 3.60 44.99 0.16 1.72 16 3 C -0.16 -1.32 9.26 71.98 0.67 -0.65 16 4 N -0.45 -9.38 2.66 -505.26 -1.34 -10.72 16 5 C 0.18 3.42 11.91 179.77 2.14 5.56 16 6 N -0.33 -9.76 12.17 -59.32 -0.72 -10.48 16 7 N -0.33 -10.83 11.60 -56.85 -0.66 -11.49 16 8 C 0.13 3.89 8.07 179.55 1.45 5.34 16 9 S 0.07 2.25 20.59 -56.49 -1.16 1.08 16 10 C -0.12 -4.16 5.72 71.23 0.41 -3.75 16 11 C 0.47 21.31 7.80 87.66 0.68 21.99 16 12 O -0.61 -32.90 15.44 -3.09 -0.05 -32.95 16 13 N -0.57 -27.33 5.09 -306.98 -1.56 -28.89 16 14 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 15 H 0.07 4.42 7.39 -2.91 -0.02 4.40 16 16 C 0.00 -0.22 5.50 84.93 0.47 0.25 16 17 N -0.92 -54.65 13.96 21.66 0.30 -54.35 16 18 Si 0.96 38.88 27.74 68.60 1.90 40.78 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.24 -8.32 6.52 99.48 0.65 -7.67 16 22 H 0.08 0.43 7.99 -2.39 -0.02 0.41 16 23 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.10 1.54 7.33 -2.38 -0.02 1.53 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.08 0.43 7.98 -2.39 -0.02 0.41 16 29 H 0.26 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 31 H 0.13 4.04 8.14 -2.40 -0.02 4.02 16 32 H 0.39 15.81 5.76 -92.71 -0.53 15.28 16 33 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -78.75 302.93 4.75 -74.00 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.54 Total: 21.61 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.50 Total: 11.40 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -3.98 Total: -115.93 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.90 Total: 40.78 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.16 Total: 1.08 kcal Total: -78.75 4.75 -74.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701298721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.652 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds