Wall clock time and date at job start Mon Mar 30 2020 01:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46797 * 2 1 4 4 C 1.35630 * 125.67478 * 263.42473 * 3 2 1 5 5 C 1.35524 * 108.84996 * 180.29457 * 4 3 2 6 6 Cl 1.73598 * 126.07268 * 179.71233 * 5 4 3 7 7 C 1.39892 * 107.84960 * 359.73580 * 5 4 3 8 8 C 1.37633 * 125.67618 * 83.26465 * 3 2 1 9 9 C 1.46677 * 126.22299 * 359.96559 * 8 3 2 10 10 O 1.21690 * 119.99793 * 4.74258 * 9 8 3 11 11 N 1.34771 * 119.99737 * 184.73616 * 9 8 3 12 12 C 1.46502 * 119.99867 * 174.99111 * 11 9 8 13 13 C 1.53001 * 109.47255 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47110 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00022 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00329 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99392 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00514 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47165 * 89.99510 * 18 16 14 20 20 H 1.48497 * 109.47615 * 209.99908 * 18 16 14 21 21 H 1.48504 * 109.47068 * 330.00253 * 18 16 14 22 22 H 1.09003 * 109.46925 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46903 * 299.99388 * 1 2 3 24 24 H 1.08999 * 109.47313 * 60.00274 * 1 2 3 25 25 H 1.08999 * 109.46588 * 239.99924 * 2 1 3 26 26 H 1.08997 * 109.47242 * 120.00265 * 2 1 3 27 27 H 1.07999 * 125.57670 * 359.97438 * 4 3 2 28 28 H 1.07993 * 126.45027 * 179.97438 * 7 5 4 29 29 H 0.96997 * 120.00550 * 354.99462 * 11 9 8 30 30 H 1.09003 * 109.46735 * 60.00359 * 12 11 9 31 31 H 1.08994 * 109.47125 * 300.00633 * 12 11 9 32 32 H 1.08999 * 109.46756 * 300.00074 * 13 12 11 33 33 H 1.09001 * 109.46587 * 60.00424 * 13 12 11 34 34 H 0.97001 * 119.99501 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4009 2.0849 -1.0945 5 6 2.7971 3.3208 -0.7041 6 17 3.3806 4.5830 -1.7433 7 6 2.6527 3.3984 0.6852 8 6 2.1622 2.1817 1.1103 9 6 1.8555 1.8068 2.4948 10 8 1.5129 0.6686 2.7552 11 7 1.9533 2.7229 3.4784 12 6 1.5424 2.3801 4.8422 13 6 1.7532 3.5881 5.7573 14 6 1.3311 3.2352 7.1602 15 1 0.9502 2.2482 7.3774 16 6 1.4302 4.1726 8.1664 17 7 1.8936 5.3746 7.9018 18 14 0.9064 3.7355 9.9053 19 1 2.0669 3.1805 10.6471 20 1 0.4149 4.9549 10.5956 21 1 -0.1791 2.7233 9.8556 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.3960 1.7185 -2.1104 28 1 2.8825 4.2505 1.3075 29 1 2.2957 3.6093 3.2834 30 1 2.1401 1.5426 5.2020 31 1 0.4885 2.1020 4.8450 32 1 2.8070 3.8664 5.7544 33 1 1.1552 4.4252 5.3972 34 1 1.9630 6.0343 8.6096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706247186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:47 Heat of formation + Delta-G solvation = -30.781101 kcal Electronic energy + Delta-G solvation = -17857.126875 eV Core-core repulsion = 14815.394012 eV Total energy + Delta-G solvation = -3041.732862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.55673 -40.13561 -37.38639 -36.65476 -35.20897 -34.61954 -32.00333 -30.28788 -30.03867 -26.80124 -24.67001 -23.80836 -22.73736 -21.60996 -20.64550 -18.97292 -18.49368 -17.11715 -16.72929 -16.60151 -16.33814 -15.92505 -15.54287 -15.13723 -14.91099 -14.61247 -14.30295 -14.13651 -13.80424 -13.62275 -13.21779 -12.98853 -12.94454 -12.52881 -12.39121 -12.25782 -12.16820 -11.84836 -11.65427 -11.45624 -10.99404 -10.60173 -10.12600 -9.73734 -9.24168 -8.23357 -6.33997 0.33700 1.13778 1.42733 1.43170 1.43978 1.54468 1.74771 2.25728 2.36925 2.51879 3.11697 3.67623 3.79930 3.96760 4.09423 4.19900 4.38680 4.46381 4.48029 4.48599 4.73757 4.83692 4.84611 4.94635 5.16155 5.25108 5.37761 5.49095 5.57781 5.71735 5.79039 6.08296 6.15529 6.53914 6.79248 7.13707 7.35423 8.88614 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.003802 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.583203 B = 7363.469742 C = 8433.081530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.094 3.906 3 N -0.401 5.401 4 C 0.053 3.947 5 C -0.141 4.141 6 Cl -0.046 7.046 7 C -0.129 4.129 8 C -0.059 4.059 9 C 0.580 3.420 10 O -0.580 6.580 11 N -0.707 5.707 12 C 0.145 3.855 13 C 0.021 3.979 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.008 3.992 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.094 0.906 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.216 0.784 28 H 0.159 0.841 29 H 0.410 0.590 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -6.864 -21.477 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.074 5.074 4 C -0.084 4.084 5 C -0.173 4.173 6 Cl -0.017 7.017 7 C -0.156 4.156 8 C -0.172 4.172 9 C 0.369 3.631 10 O -0.463 6.463 11 N -0.356 5.356 12 C 0.022 3.978 13 C -0.016 4.016 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.190 1.190 22 H 0.112 0.888 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.150 0.850 26 H 0.105 0.895 27 H 0.232 0.768 28 H 0.176 0.824 29 H 0.246 0.754 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.504 -7.772 -21.233 22.616 hybrid contribution 0.054 0.767 1.040 1.293 sum 0.557 -7.005 -20.193 21.381 Atomic orbital electron populations 1.22038 0.93633 1.04053 1.01846 1.22289 0.96306 0.77936 1.06060 1.44246 1.46055 1.12391 1.04725 1.22295 1.02096 0.90758 0.93301 1.19984 1.13571 0.92477 0.91293 1.98322 1.87506 1.50323 1.65573 1.21452 1.03087 0.96652 0.94398 1.19829 1.16017 0.93270 0.88085 1.17251 0.77180 0.84610 0.84084 1.90738 1.50567 1.20425 1.84555 1.45839 1.64832 1.16230 1.08748 1.21274 0.98465 0.98664 0.79381 1.19147 0.96413 0.92595 0.93453 1.21455 1.43565 0.99111 0.94356 0.92127 1.25868 0.94949 0.94732 1.03574 1.70065 1.46712 1.05192 1.34637 0.85443 0.78823 0.77877 0.78900 1.19796 1.20591 1.18958 0.88762 0.94893 0.90914 0.85010 0.89527 0.76770 0.82382 0.75421 0.93078 0.93076 0.97311 0.97259 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.23 71.98 0.74 -2.09 16 2 C 0.09 1.69 6.14 86.38 0.53 2.22 16 3 N -0.40 -8.90 2.76 -510.86 -1.41 -10.31 16 4 C 0.05 0.95 11.35 83.48 0.95 1.90 16 5 C -0.14 -3.05 6.66 22.04 0.15 -2.90 16 6 Cl -0.05 -0.90 29.30 -2.72 -0.08 -0.98 16 7 C -0.13 -3.26 10.35 22.59 0.23 -3.03 16 8 C -0.06 -1.65 6.89 40.36 0.28 -1.38 16 9 C 0.58 20.25 7.77 86.45 0.67 20.92 16 10 O -0.58 -22.94 14.51 -4.32 -0.06 -23.00 16 11 N -0.71 -25.41 5.54 -467.09 -2.59 -27.99 16 12 C 0.15 6.23 5.62 86.38 0.49 6.72 16 13 C 0.02 1.08 5.09 29.85 0.15 1.23 16 14 C -0.55 -30.41 9.11 25.60 0.23 -30.18 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.01 0.43 5.46 84.65 0.46 0.89 16 17 N -0.93 -54.42 13.29 21.45 0.28 -54.13 16 18 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.03 0.83 7.85 -2.39 -0.02 0.81 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.13 1.26 8.12 -2.39 -0.02 1.24 16 26 H 0.09 2.03 6.61 -2.39 -0.02 2.01 16 27 H 0.22 1.97 8.06 -2.91 -0.02 1.94 16 28 H 0.16 3.68 7.45 -2.91 -0.02 3.66 16 29 H 0.41 13.10 7.37 -92.71 -0.68 12.41 16 30 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -66.78 311.27 3.47 -63.31 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.43 Total: 13.31 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 4.88 Total: -5.70 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -3.71 Total: -92.44 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.06 Total: -23.00 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -66.78 3.47 -63.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706247186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.526 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds