Wall clock time and date at job start Mon Mar 30 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.34726 * 117.00129 * 180.02562 * 12 11 10 14 14 O 1.21485 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.47567 * 119.99927 * 179.97438 * 13 12 11 16 16 C 1.39739 * 120.16359 * 359.72505 * 15 13 12 17 17 C 1.37831 * 119.92201 * 179.76644 * 16 15 13 18 18 C 1.38463 * 120.24386 * 0.51221 * 17 16 15 19 19 C 1.38385 * 120.32870 * 359.73667 * 18 17 16 20 20 F 1.35094 * 119.96297 * 179.97438 * 19 18 17 21 21 C 1.38538 * 120.07465 * 0.02562 * 19 18 17 22 22 F 1.35096 * 120.12624 * 180.02562 * 21 19 18 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 29 29 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 30 30 H 1.08004 * 120.04240 * 359.97438 * 16 15 13 31 31 H 1.07998 * 119.87683 * 180.22895 * 17 16 15 32 32 H 1.07998 * 119.83584 * 179.76433 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 8 2.4237 -6.0908 0.0049 13 6 1.9088 -7.3358 0.0060 14 8 0.7044 -7.4950 0.0070 15 6 2.8077 -8.5060 0.0058 16 6 4.1935 -8.3269 -0.0012 17 6 5.0286 -9.4234 0.0036 18 6 4.4994 -10.7030 0.0046 19 6 3.1286 -10.8923 0.0064 20 9 2.6203 -12.1439 0.0068 21 6 2.2769 -9.7996 0.0066 22 9 0.9385 -9.9832 0.0088 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6052 -0.8873 28 1 0.8539 -5.0438 0.8948 29 1 0.8532 -5.0459 -0.8851 30 1 4.6099 -7.3303 -0.0069 31 1 6.0995 -9.2841 0.0020 32 1 5.1598 -11.5575 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726676832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:15 Heat of formation + Delta-G solvation = -162.903863 kcal Electronic energy + Delta-G solvation = -19316.565233 eV Core-core repulsion = 15685.013667 eV Total energy + Delta-G solvation = -3631.551566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.80014 -48.85797 -40.47784 -38.87286 -36.50506 -34.04329 -32.10113 -31.47595 -30.82060 -27.25702 -25.10260 -23.39955 -22.97750 -21.24963 -20.39964 -18.66292 -17.84897 -17.49017 -16.82974 -16.80848 -16.39161 -16.23524 -15.81738 -15.26079 -15.23646 -14.64491 -14.49537 -14.10423 -13.57921 -13.25014 -12.62744 -12.50312 -12.22805 -12.13939 -12.10989 -11.90077 -10.98219 -10.75189 -10.68985 -10.50247 -10.45492 -9.78450 -9.62175 -9.55342 -9.21092 -9.20792 -8.40748 -6.05494 -4.09006 0.03384 0.46647 2.23694 2.50547 3.09205 3.30826 3.34615 3.35595 3.37842 3.90930 4.10354 4.23094 4.40289 4.48558 4.62347 5.15000 5.22507 5.30371 5.43272 5.52161 5.54609 5.56580 5.66577 5.95098 6.17709 6.35162 6.48638 6.74371 6.92801 7.57070 7.67918 7.73167 7.92257 8.32776 8.96990 9.55402 11.05900 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046125 B = 0.003027 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.900221 B = 9247.836219 C = 9828.986877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.069 3.931 12 O -0.350 6.350 13 C 0.502 3.498 14 O -0.491 6.491 15 C -0.131 4.131 16 C -0.041 4.041 17 C -0.114 4.114 18 C -0.094 4.094 19 C 0.053 3.947 20 F -0.124 7.124 21 C 0.129 3.871 22 F -0.103 7.103 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.160 0.840 31 H 0.151 0.849 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.153 -21.695 0.001 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.266 6.266 13 C 0.345 3.655 14 O -0.379 6.379 15 C -0.133 4.133 16 C -0.059 4.059 17 C -0.133 4.133 18 C -0.113 4.113 19 C 0.033 3.967 20 F -0.103 7.103 21 C 0.108 3.892 22 F -0.081 7.081 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.169 0.831 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.528 -21.621 0.002 24.048 hybrid contribution -0.162 0.658 0.001 0.677 sum 10.366 -20.963 0.002 23.386 Atomic orbital electron populations 1.69951 1.06102 1.26938 1.50321 1.25031 0.94879 0.99377 0.95152 0.86598 0.79530 0.82869 0.78662 1.20170 1.21256 1.20164 1.21124 0.93077 0.90658 1.51295 0.92453 1.19053 0.93835 0.90670 0.97763 1.21783 0.99991 0.90772 1.02046 1.23612 0.91166 0.83079 1.02518 1.86511 1.42464 1.14399 1.83236 1.20602 0.86790 0.83910 0.74242 1.90916 1.15669 1.86862 1.44453 1.19203 0.94532 0.89723 1.09832 1.21608 0.90459 1.01374 0.92491 1.21135 1.01315 0.90696 1.00111 1.21374 0.92159 0.99761 0.97991 1.17462 0.91961 0.78822 1.08503 1.91560 1.87598 1.36955 1.94159 1.17686 0.78314 0.91942 1.01224 1.91644 1.28057 1.95665 1.92695 0.92788 0.96176 0.96186 0.92029 0.92025 0.91199 0.91209 0.82282 0.83137 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.16 5.53 -26.73 -0.15 -2.31 16 11 C 0.07 1.24 5.48 37.16 0.20 1.44 16 12 O -0.35 -5.57 9.47 -40.56 -0.38 -5.96 16 13 C 0.50 7.88 7.89 34.54 0.27 8.16 16 14 O -0.49 -9.26 15.13 -19.25 -0.29 -9.55 16 15 C -0.13 -1.58 5.88 -104.94 -0.62 -2.20 16 16 C -0.04 -0.34 9.61 -39.17 -0.38 -0.72 16 17 C -0.11 -0.65 10.03 -39.65 -0.40 -1.05 16 18 C -0.09 -0.59 10.01 -39.44 -0.39 -0.99 16 19 C 0.05 0.51 7.30 -39.42 -0.29 0.22 16 20 F -0.12 -1.31 17.18 2.25 0.04 -1.27 16 21 C 0.13 1.59 7.29 -38.88 -0.28 1.30 16 22 F -0.10 -1.54 15.46 2.25 0.03 -1.51 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.16 1.17 7.61 -52.48 -0.40 0.77 16 31 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 32 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -32.11 298.57 -6.29 -38.40 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: -3.32 Total: -6.00 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.58 Total: -8.99 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.68 Total: -15.51 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.11 -6.29 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726676832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.503 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds