Wall clock time and date at job start Mon Mar 30 2020 00:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.34726 * 117.00129 * 180.02562 * 12 11 10 14 14 O 1.21485 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.47567 * 119.99927 * 179.97438 * 13 12 11 16 16 C 1.39739 * 120.16359 * 359.72505 * 15 13 12 17 17 C 1.37831 * 119.92201 * 179.76644 * 16 15 13 18 18 C 1.38463 * 120.24386 * 0.51221 * 17 16 15 19 19 C 1.38385 * 120.32870 * 359.73667 * 18 17 16 20 20 F 1.35094 * 119.96297 * 179.97438 * 19 18 17 21 21 C 1.38538 * 120.07465 * 0.02562 * 19 18 17 22 22 F 1.35096 * 120.12624 * 180.02562 * 21 19 18 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 29 29 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 30 30 H 1.08004 * 120.04240 * 359.97438 * 16 15 13 31 31 H 1.07998 * 119.87683 * 180.22895 * 17 16 15 32 32 H 1.07998 * 119.83584 * 179.76433 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 8 2.4237 -6.0908 0.0049 13 6 1.9088 -7.3358 0.0060 14 8 0.7044 -7.4950 0.0070 15 6 2.8077 -8.5060 0.0058 16 6 4.1935 -8.3269 -0.0012 17 6 5.0286 -9.4234 0.0036 18 6 4.4994 -10.7030 0.0046 19 6 3.1286 -10.8923 0.0064 20 9 2.6203 -12.1439 0.0068 21 6 2.2769 -9.7996 0.0066 22 9 0.9385 -9.9832 0.0088 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6052 -0.8873 28 1 0.8539 -5.0438 0.8948 29 1 0.8532 -5.0459 -0.8851 30 1 4.6099 -7.3303 -0.0069 31 1 6.0995 -9.2841 0.0020 32 1 5.1598 -11.5575 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726676832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:14 Heat of formation + Delta-G solvation = -181.048854 kcal Electronic energy + Delta-G solvation = -19317.352059 eV Core-core repulsion = 15685.013667 eV Total energy + Delta-G solvation = -3632.338392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.66120 -49.73577 -41.68419 -39.67859 -37.88694 -35.95057 -33.76464 -32.55815 -31.51729 -29.06791 -26.26521 -24.87786 -23.86157 -22.37517 -22.16664 -19.62533 -18.86137 -18.54841 -18.27862 -17.92858 -17.73200 -17.36960 -16.94853 -16.48609 -16.16119 -15.85950 -15.66601 -15.48698 -14.87298 -14.17284 -14.07696 -13.96955 -13.79447 -13.21347 -13.10269 -12.89421 -12.79619 -12.53157 -12.42189 -12.11881 -11.88211 -11.47340 -11.44859 -11.25787 -10.56130 -10.35932 -9.93306 -8.20956 -6.32854 -0.75931 -0.22044 1.22718 1.31593 1.43221 1.46059 1.54128 2.31189 2.42057 2.58034 3.13149 3.14885 3.25427 3.58713 3.65715 3.97430 4.01460 4.07207 4.30025 4.40571 4.62657 4.79300 4.82587 4.86297 4.98813 5.06845 5.08401 5.27484 5.49459 5.56100 5.63836 5.80565 6.18711 6.46623 6.83402 7.36946 8.91178 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046125 B = 0.003027 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.900221 B = 9247.836219 C = 9828.986877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.024 3.976 10 C -0.091 4.091 11 C 0.078 3.922 12 O -0.339 6.339 13 C 0.500 3.500 14 O -0.534 6.534 15 C -0.154 4.154 16 C -0.033 4.033 17 C -0.090 4.090 18 C -0.068 4.068 19 C 0.043 3.957 20 F -0.133 7.133 21 C 0.096 3.904 22 F -0.132 7.132 23 H 0.264 0.736 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.173 0.827 31 H 0.200 0.800 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.236 -22.325 -0.002 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.013 4.013 10 C -0.128 4.128 11 C 0.004 3.996 12 O -0.256 6.256 13 C 0.346 3.654 14 O -0.425 6.425 15 C -0.156 4.156 16 C -0.051 4.051 17 C -0.107 4.107 18 C -0.086 4.086 19 C 0.023 3.977 20 F -0.111 7.111 21 C 0.075 3.925 22 F -0.110 7.110 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.191 0.809 31 H 0.217 0.783 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 14.642 -22.271 -0.002 26.653 hybrid contribution -1.350 0.746 0.001 1.543 sum 13.291 -21.525 0.000 25.298 Atomic orbital electron populations 1.70101 1.07993 1.28000 1.51477 1.26037 0.95762 1.03635 0.94609 0.85428 0.78162 0.77656 0.79380 1.18907 1.21183 1.18899 1.21609 0.93876 0.91717 1.50861 0.91300 1.18947 0.94345 0.92618 0.95390 1.21460 0.98686 0.89653 1.03047 1.23244 0.91026 0.83372 1.01942 1.86481 1.41361 1.14320 1.83394 1.21337 0.87008 0.84319 0.72727 1.90892 1.17697 1.87199 1.46707 1.19084 0.95548 0.87792 1.13224 1.21903 0.88762 1.03276 0.91181 1.21671 1.03122 0.89120 0.96788 1.21912 0.90629 1.01601 0.94453 1.17736 0.93031 0.77734 1.09162 1.91538 1.88007 1.37282 1.94319 1.18109 0.77582 0.93183 1.03592 1.91558 1.30279 1.95867 1.93297 0.92723 0.98630 0.98640 0.90922 0.90912 0.91918 0.91927 0.80947 0.78331 0.78947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.94 13.29 21.45 0.28 -56.66 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.63 5.53 30.60 0.17 -3.46 16 11 C 0.08 2.86 5.48 71.98 0.39 3.25 16 12 O -0.34 -10.79 9.47 -56.36 -0.53 -11.32 16 13 C 0.50 16.20 7.89 70.28 0.55 16.75 16 14 O -0.53 -21.45 15.13 19.88 0.30 -21.15 16 15 C -0.15 -3.67 5.88 -20.07 -0.12 -3.78 16 16 C -0.03 -0.45 9.61 22.54 0.22 -0.23 16 17 C -0.09 -0.54 10.03 22.23 0.22 -0.32 16 18 C -0.07 -0.54 10.01 22.36 0.22 -0.32 16 19 C 0.04 0.77 7.30 22.38 0.16 0.93 16 20 F -0.13 -2.68 17.18 44.97 0.77 -1.91 16 21 C 0.10 2.39 7.29 22.73 0.17 2.56 16 22 F -0.13 -4.27 15.46 44.97 0.70 -3.57 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.17 1.89 7.61 -2.91 -0.02 1.87 16 31 H 0.20 -0.54 8.06 -2.91 -0.02 -0.57 16 32 H 0.19 0.06 8.06 -2.91 -0.02 0.03 16 Total: -1.00 -73.77 298.57 7.52 -66.24 By element: Atomic # 1 Polarization: -5.36 SS G_CDS: 1.14 Total: -4.22 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 2.84 Total: -12.87 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.23 Total: -32.47 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.47 Total: -5.47 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -73.77 7.52 -66.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726676832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.806 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds