Wall clock time and date at job start Mon Mar 30 2020 01:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31302 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47157 * 239.99853 * 3 2 1 5 5 H 1.48494 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46971 * 120.00308 * 3 2 1 7 7 C 1.38980 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.37314 * 119.99546 * 0.02562 * 7 2 1 10 10 C 1.36529 * 126.06660 * 180.24449 * 9 7 2 11 11 C 1.35689 * 107.50181 * 180.13621 * 10 9 7 12 12 N 1.40531 * 126.07914 * 179.90050 * 11 10 9 13 13 C 1.38296 * 119.99371 * 179.97438 * 12 11 10 14 14 N 1.33035 * 120.84564 * 359.71378 * 13 12 11 15 15 C 1.32058 * 121.02774 * 180.02562 * 14 13 12 16 16 N 1.31569 * 122.72476 * 359.97438 * 15 14 13 17 17 C 1.33197 * 120.72025 * 0.02562 * 16 15 14 18 18 N 1.36777 * 134.30168 * 179.97438 * 17 16 15 19 19 H 0.97007 * 124.98659 * 0.02562 * 18 17 16 20 20 C 1.37105 * 110.02251 * 179.28513 * 18 17 16 21 21 C 1.34314 * 109.80508 * 0.63043 * 20 18 17 22 22 C 1.40342 * 120.83930 * 179.44917 * 13 12 11 23 23 C 1.40675 * 107.83002 * 359.63358 * 11 10 9 24 24 N 1.30904 * 108.39471 * 0.22994 * 23 11 10 25 25 H 0.96998 * 120.00151 * 359.97438 * 1 2 3 26 26 H 1.07996 * 126.24634 * 0.03160 * 10 9 7 27 27 H 0.97001 * 119.99990 * 359.70757 * 12 11 10 28 28 H 1.08001 * 118.63885 * 180.02562 * 15 14 13 29 29 H 1.07995 * 125.09348 * 180.09792 * 20 18 17 30 30 H 1.08000 * 126.59905 * 179.46154 * 21 20 18 31 31 H 1.08004 * 125.80077 * 180.24210 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2820 2.7464 -0.0006 6 1 3.1008 1.6964 1.2125 7 6 2.0080 -1.2036 0.0005 8 1 3.0879 -1.2035 0.0001 9 7 1.3214 -2.3927 0.0005 10 6 1.8752 -3.6406 0.0057 11 6 0.8579 -4.5386 0.0006 12 7 0.9890 -5.9377 0.0014 13 6 -0.1390 -6.7378 -0.0037 14 7 -1.3561 -6.2009 -0.0038 15 6 -2.4357 -6.9614 -0.0082 16 7 -2.3796 -8.2759 -0.0132 17 6 -1.2066 -8.9070 -0.0136 18 7 -0.8291 -10.2216 -0.0176 19 1 -1.4394 -10.9756 -0.0216 20 6 0.5386 -10.3172 -0.0319 21 6 1.0808 -9.0884 -0.0236 22 6 -0.0286 -8.1369 -0.0146 23 6 -0.3513 -3.8196 0.0006 24 7 -0.0715 -2.5408 0.0006 25 1 -0.4850 0.8400 0.0004 26 1 2.9303 -3.8710 0.0111 27 1 1.8707 -6.3422 0.0017 28 1 -3.4048 -6.4847 -0.0085 29 1 1.0963 -11.2419 -0.0393 30 1 2.1340 -8.8493 -0.0229 31 1 -1.3420 -4.2496 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726968347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:20 Heat of formation + Delta-G solvation = 181.990995 kcal Electronic energy + Delta-G solvation = -19180.780624 eV Core-core repulsion = 16079.459509 eV Total energy + Delta-G solvation = -3101.321115 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.49422 -39.53779 -38.27471 -35.71870 -33.38146 -31.81743 -30.88876 -30.12393 -28.97217 -27.26595 -24.89748 -23.52535 -22.72014 -20.83591 -20.47611 -19.50669 -18.79690 -17.79001 -16.61650 -15.71362 -15.60627 -15.38818 -15.17331 -14.35565 -14.12289 -13.59511 -13.52868 -13.24406 -13.02573 -12.85512 -12.74090 -11.66260 -11.65688 -11.30946 -11.15341 -10.93517 -10.54409 -10.16048 -9.74031 -9.12885 -8.85773 -8.79634 -8.51638 -8.04369 -7.83637 -6.53944 -6.43972 -4.18478 1.34458 1.83539 2.74621 2.86724 2.99465 3.05946 3.09835 3.55246 3.61350 3.88545 4.29843 4.57911 4.62270 4.73555 4.84861 4.96144 5.04139 5.23933 5.37857 5.72273 5.81035 6.28288 6.38080 6.43364 6.53282 6.84643 6.98959 7.06128 7.18399 7.23233 7.54378 7.79037 7.95183 8.17484 8.34429 8.72596 8.88079 9.40164 9.70731 10.41903 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.049341 B = 0.003969 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.346898 B = 7052.994767 C = 7610.467707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.323 4.323 8 H 0.115 0.885 9 N -0.143 5.143 10 C -0.085 4.085 11 C -0.060 4.060 12 N -0.586 5.586 13 C 0.487 3.513 14 N -0.585 5.585 15 C 0.363 3.637 16 N -0.594 5.594 17 C 0.342 3.658 18 N -0.574 5.574 19 H 0.417 0.583 20 C 0.021 3.979 21 C -0.160 4.160 22 C -0.276 4.276 23 C -0.026 4.026 24 N -0.263 5.263 25 H 0.275 0.725 26 H 0.144 0.856 27 H 0.410 0.590 28 H 0.195 0.805 29 H 0.174 0.826 30 H 0.146 0.854 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -15.140 -0.037 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.132 0.868 9 N 0.090 4.910 10 C -0.237 4.237 11 C -0.166 4.166 12 N -0.204 5.204 13 C 0.236 3.764 14 N -0.314 5.314 15 C 0.071 3.929 16 N -0.323 5.323 17 C 0.104 3.896 18 N -0.182 5.182 19 H 0.254 0.746 20 C -0.104 4.104 21 C -0.186 4.186 22 C -0.290 4.290 23 C -0.203 4.203 24 N -0.093 5.093 25 H 0.086 0.914 26 H 0.161 0.839 27 H 0.245 0.755 28 H 0.211 0.789 29 H 0.191 0.809 30 H 0.163 0.837 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.461 -13.307 -0.030 13.315 hybrid contribution 1.762 -1.123 -0.005 2.090 sum 2.223 -14.431 -0.035 14.601 Atomic orbital electron populations 1.70206 1.06081 1.28041 1.35273 1.25619 0.95700 1.00187 0.95516 0.85909 0.79158 0.79713 0.79444 1.19202 1.20133 1.19195 1.19813 0.91636 0.80633 1.53471 0.86767 1.44548 1.04135 1.03169 1.39174 1.21215 0.96771 0.85461 1.20248 1.17327 0.94628 0.80708 1.23981 1.41072 1.04888 1.03655 1.70763 1.17880 0.87164 0.84791 0.86532 1.68240 0.97211 1.38630 1.27333 1.24426 0.96860 0.83889 0.87722 1.67371 1.25644 1.11614 1.27631 1.18119 0.89889 0.85039 0.96544 1.41406 1.06927 1.05015 1.64815 0.74625 1.21664 0.81469 0.99396 1.07878 1.21434 0.97628 0.90719 1.08856 1.19768 0.95980 0.92800 1.20452 1.24479 0.98636 0.90333 1.06844 1.78260 0.89991 1.15267 1.25756 0.91439 0.83860 0.75479 0.78900 0.80906 0.83673 0.79371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.35 11.81 55.49 0.66 -20.69 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 18.87 29.55 -169.99 -5.02 13.85 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.32 -8.55 10.25 -14.82 -0.15 -8.70 16 8 H 0.11 2.70 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.92 3.74 -11.41 -0.04 -3.96 16 10 C -0.09 -2.02 11.50 -16.37 -0.19 -2.21 16 11 C -0.06 -1.38 6.92 -83.86 -0.58 -1.96 16 12 N -0.59 -10.89 5.59 -9.86 -0.06 -10.95 16 13 C 0.49 9.02 7.51 -154.70 -1.16 7.85 16 14 N -0.59 -11.20 6.66 -13.66 -0.09 -11.29 16 15 C 0.36 5.96 12.23 -92.12 -1.13 4.84 16 16 N -0.59 -9.70 10.47 -13.89 -0.15 -9.85 16 17 C 0.34 5.29 8.48 -155.85 -1.32 3.97 16 18 N -0.57 -6.40 6.03 -12.13 -0.07 -6.48 16 19 H 0.42 3.38 8.96 -40.82 -0.37 3.02 16 20 C 0.02 0.20 11.83 -16.58 -0.20 0.00 16 21 C -0.16 -1.92 10.98 -37.79 -0.41 -2.33 16 22 C -0.28 -4.42 6.32 -104.99 -0.66 -5.08 16 23 C -0.03 -0.67 10.86 -17.03 -0.18 -0.85 16 24 N -0.26 -7.51 10.39 30.81 0.32 -7.19 16 25 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.14 2.84 8.06 -52.49 -0.42 2.42 16 27 H 0.41 6.21 8.75 -40.82 -0.36 5.85 16 28 H 0.19 2.49 8.06 -52.49 -0.42 2.06 16 29 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.19 4.54 5.62 -52.48 -0.30 4.24 16 LS Contribution 279.67 15.07 4.21 4.21 Total: -1.00 -33.97 279.67 -8.58 -42.56 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -2.26 Total: 13.16 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -6.09 Total: -3.36 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: 0.57 Total: -70.42 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.97 -8.58 -42.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726968347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.547 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds