Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31302 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47157 * 239.99853 * 3 2 1 5 5 H 1.48494 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46971 * 120.00308 * 3 2 1 7 7 C 1.38980 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.37314 * 119.99546 * 0.02562 * 7 2 1 10 10 C 1.36529 * 126.06660 * 180.24449 * 9 7 2 11 11 C 1.35689 * 107.50181 * 180.13621 * 10 9 7 12 12 N 1.40531 * 126.07914 * 179.90050 * 11 10 9 13 13 C 1.38296 * 119.99371 * 179.97438 * 12 11 10 14 14 N 1.33035 * 120.84564 * 359.71378 * 13 12 11 15 15 C 1.32058 * 121.02774 * 180.02562 * 14 13 12 16 16 N 1.31569 * 122.72476 * 359.97438 * 15 14 13 17 17 C 1.33197 * 120.72025 * 0.02562 * 16 15 14 18 18 N 1.36777 * 134.30168 * 179.97438 * 17 16 15 19 19 H 0.97007 * 124.98659 * 0.02562 * 18 17 16 20 20 C 1.37105 * 110.02251 * 179.28513 * 18 17 16 21 21 C 1.34314 * 109.80508 * 0.63043 * 20 18 17 22 22 C 1.40342 * 120.83930 * 179.44917 * 13 12 11 23 23 C 1.40675 * 107.83002 * 359.63358 * 11 10 9 24 24 N 1.30904 * 108.39471 * 0.22994 * 23 11 10 25 25 H 0.96998 * 120.00151 * 359.97438 * 1 2 3 26 26 H 1.07996 * 126.24634 * 0.03160 * 10 9 7 27 27 H 0.97001 * 119.99990 * 359.70757 * 12 11 10 28 28 H 1.08001 * 118.63885 * 180.02562 * 15 14 13 29 29 H 1.07995 * 125.09348 * 180.09792 * 20 18 17 30 30 H 1.08000 * 126.59905 * 179.46154 * 21 20 18 31 31 H 1.08004 * 125.80077 * 180.24210 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2820 2.7464 -0.0006 6 1 3.1008 1.6964 1.2125 7 6 2.0080 -1.2036 0.0005 8 1 3.0879 -1.2035 0.0001 9 7 1.3214 -2.3927 0.0005 10 6 1.8752 -3.6406 0.0057 11 6 0.8579 -4.5386 0.0006 12 7 0.9890 -5.9377 0.0014 13 6 -0.1390 -6.7378 -0.0037 14 7 -1.3561 -6.2009 -0.0038 15 6 -2.4357 -6.9614 -0.0082 16 7 -2.3796 -8.2759 -0.0132 17 6 -1.2066 -8.9070 -0.0136 18 7 -0.8291 -10.2216 -0.0176 19 1 -1.4394 -10.9756 -0.0216 20 6 0.5386 -10.3172 -0.0319 21 6 1.0808 -9.0884 -0.0236 22 6 -0.0286 -8.1369 -0.0146 23 6 -0.3513 -3.8196 0.0006 24 7 -0.0715 -2.5408 0.0006 25 1 -0.4850 0.8400 0.0004 26 1 2.9303 -3.8710 0.0111 27 1 1.8707 -6.3422 0.0017 28 1 -3.4048 -6.4847 -0.0085 29 1 1.0963 -11.2419 -0.0393 30 1 2.1340 -8.8493 -0.0229 31 1 -1.3420 -4.2496 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726968347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = 160.433731 kcal Electronic energy + Delta-G solvation = -19181.715417 eV Core-core repulsion = 16079.459509 eV Total energy + Delta-G solvation = -3102.255908 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.63718 -41.36051 -39.49803 -37.16956 -35.22031 -33.18652 -32.30872 -31.76559 -30.22040 -28.89490 -26.74184 -24.76292 -24.05762 -22.52177 -21.66775 -21.14395 -20.10585 -19.40670 -17.97244 -17.36565 -16.99278 -16.92167 -16.38562 -15.86617 -15.49097 -15.33817 -15.04439 -14.51634 -14.19805 -14.15459 -13.88945 -13.42810 -13.12600 -13.07707 -12.76697 -12.68976 -12.11713 -11.44794 -11.32467 -10.73136 -10.70752 -10.05542 -9.95194 -9.88849 -9.09156 -8.42043 -8.06132 -6.15614 0.13624 0.56516 1.36644 1.41416 1.57376 1.78293 1.86386 1.88669 2.08174 2.29380 2.52027 2.95810 3.11183 3.18459 3.52698 3.73266 3.91822 4.11651 4.34544 4.51263 4.69816 4.79476 4.83449 5.04329 5.18683 5.33725 5.36588 5.48714 5.87233 5.96230 6.00610 6.22306 6.51667 6.55789 6.81034 6.96639 7.51008 7.58605 7.77306 8.57122 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.049341 B = 0.003969 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.346898 B = 7052.994767 C = 7610.467707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.005 4.005 3 Si 1.017 2.983 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.357 4.357 8 H 0.136 0.864 9 N -0.172 5.172 10 C -0.088 4.088 11 C -0.041 4.041 12 N -0.589 5.589 13 C 0.466 3.534 14 N -0.616 5.616 15 C 0.345 3.655 16 N -0.591 5.591 17 C 0.312 3.688 18 N -0.560 5.560 19 H 0.433 0.567 20 C 0.059 3.941 21 C -0.187 4.187 22 C -0.282 4.282 23 C -0.048 4.048 24 N -0.311 5.311 25 H 0.276 0.724 26 H 0.180 0.820 27 H 0.425 0.575 28 H 0.217 0.783 29 H 0.229 0.771 30 H 0.170 0.830 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -17.825 -0.051 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.216 4.216 3 Si 0.836 3.164 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.488 4.488 8 H 0.153 0.847 9 N 0.059 4.941 10 C -0.238 4.238 11 C -0.148 4.148 12 N -0.212 5.212 13 C 0.217 3.783 14 N -0.345 5.345 15 C 0.054 3.946 16 N -0.318 5.318 17 C 0.073 3.927 18 N -0.169 5.169 19 H 0.274 0.726 20 C -0.065 4.065 21 C -0.213 4.213 22 C -0.296 4.296 23 C -0.225 4.225 24 N -0.142 5.142 25 H 0.085 0.915 26 H 0.197 0.803 27 H 0.263 0.737 28 H 0.234 0.766 29 H 0.246 0.754 30 H 0.187 0.813 31 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.410 -16.100 -0.044 16.279 hybrid contribution 1.087 -0.733 -0.002 1.311 sum 3.497 -16.833 -0.046 17.193 Atomic orbital electron populations 1.70388 1.08259 1.29001 1.37515 1.26809 0.96481 1.04088 0.94250 0.84683 0.77575 0.74004 0.80114 1.17921 1.20200 1.17906 1.20505 0.92842 0.81120 1.54360 0.84671 1.44794 1.03818 1.04470 1.40995 1.21883 0.98598 0.84550 1.18818 1.17370 0.93376 0.82832 1.21201 1.40863 1.05924 1.01679 1.72714 1.18194 0.86914 0.86064 0.87143 1.68127 0.98283 1.40192 1.27934 1.24873 0.97193 0.84196 0.88368 1.67402 1.26397 1.11491 1.26519 1.18479 0.89537 0.86911 0.97784 1.41568 1.08110 1.03891 1.63301 0.72649 1.22593 0.80483 1.00656 1.02813 1.21827 0.98125 0.90485 1.10845 1.20092 0.98107 0.92019 1.19395 1.24703 0.99920 0.90177 1.07681 1.78137 0.91683 1.17011 1.27391 0.91475 0.80265 0.73654 0.76638 0.75431 0.81289 0.79006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.78 11.81 21.66 0.26 -47.52 16 2 C 0.00 -0.25 5.50 84.95 0.47 0.22 16 3 Si 1.02 39.11 29.55 68.60 2.03 41.14 16 4 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 5 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.36 -19.28 10.25 84.01 0.86 -18.42 16 8 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 9 N -0.17 -9.69 3.74 -190.00 -0.71 -10.40 16 10 C -0.09 -4.17 11.50 83.37 0.96 -3.21 16 11 C -0.04 -1.91 6.92 37.75 0.26 -1.65 16 12 N -0.59 -21.75 5.59 -185.11 -1.04 -22.78 16 13 C 0.47 17.22 7.51 133.41 1.00 18.22 16 14 N -0.62 -24.17 6.66 -197.14 -1.31 -25.48 16 15 C 0.34 11.49 12.23 180.87 2.21 13.70 16 16 N -0.59 -18.85 10.47 -197.87 -2.07 -20.92 16 17 C 0.31 9.05 8.48 133.96 1.14 10.19 16 18 N -0.56 -10.31 6.03 -192.29 -1.16 -11.47 16 19 H 0.43 5.23 8.96 -92.70 -0.83 4.40 16 20 C 0.06 0.83 11.83 82.97 0.98 1.81 16 21 C -0.19 -3.80 10.98 23.43 0.26 -3.54 16 22 C -0.28 -8.57 6.32 -20.10 -0.13 -8.70 16 23 C -0.05 -2.57 10.86 85.43 0.93 -1.64 16 24 N -0.31 -18.69 10.39 -56.45 -0.59 -19.28 16 25 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.18 6.88 8.06 -2.91 -0.02 6.85 16 27 H 0.42 12.37 8.75 -92.71 -0.81 11.56 16 28 H 0.22 5.71 8.06 -2.91 -0.02 5.68 16 29 H 0.23 0.67 8.06 -2.91 -0.02 0.65 16 30 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.19 9.80 5.62 -2.91 -0.02 9.78 16 Total: -1.00 -78.72 279.67 3.92 -74.81 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.42 Total: 34.94 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 8.94 Total: 6.98 kcal Atomic # 7 Polarization: -151.24 SS G_CDS: -6.62 Total: -157.86 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -78.72 3.92 -74.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726968347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.239 kcal (2) G-P(sol) polarization free energy of solvation -78.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds