Wall clock time and date at job start Mon Mar 30 2020 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.34187 * 125.67177 * 119.46003 * 3 2 1 5 5 C 1.30526 * 109.79465 * 179.97438 * 4 3 2 6 6 N 1.34692 * 108.34940 * 359.97438 * 5 4 3 7 7 C 1.46498 * 126.73538 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47235 * 124.99875 * 7 6 5 9 9 C 1.38305 * 119.92910 * 270.25475 * 8 7 6 10 10 C 1.38104 * 120.06272 * 180.25358 * 9 8 7 11 11 C 1.38874 * 119.93265 * 359.47314 * 10 9 8 12 12 O 1.35749 * 120.06890 * 180.29770 * 11 10 9 13 13 C 1.34834 * 117.00013 * 354.46142 * 12 11 10 14 14 H 1.07996 * 120.00021 * 5.05939 * 13 12 11 15 15 C 1.38654 * 119.99707 * 185.05824 * 13 12 11 16 16 N 1.31563 * 119.99570 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00407 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47217 * 90.00112 * 17 15 13 19 19 H 1.48504 * 109.47173 * 209.99833 * 17 15 13 20 20 H 1.48502 * 109.47283 * 329.99797 * 17 15 13 21 21 C 1.38882 * 119.86301 * 0.27303 * 11 10 9 22 22 C 1.38094 * 119.92975 * 0.02562 * 21 11 10 23 23 N 1.31722 * 125.68003 * 299.73891 * 3 2 1 24 24 H 1.08002 * 125.82316 * 179.97438 * 5 4 3 25 25 H 1.09006 * 109.47116 * 5.00025 * 7 6 5 26 26 H 1.08998 * 109.47244 * 245.00179 * 7 6 5 27 27 H 1.07990 * 119.96792 * 0.02562 * 9 8 7 28 28 H 1.08000 * 120.02708 * 179.74272 * 10 9 8 29 29 H 0.96992 * 119.99813 * 179.97438 * 16 15 13 30 30 H 1.08005 * 120.03486 * 180.02562 * 21 11 10 31 31 H 1.08006 * 119.96524 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3502 0.5371 -0.9491 5 6 4.6058 0.3625 -0.6380 6 7 4.6642 -0.2984 0.5342 7 6 5.8751 -0.7032 1.2525 8 6 5.8315 -0.1592 2.6572 9 6 6.3593 1.0897 2.9302 10 6 6.3255 1.5887 4.2175 11 6 5.7510 0.8398 5.2361 12 8 5.7109 1.3303 6.5013 13 6 6.3468 2.4979 6.7256 14 1 6.7870 3.0400 5.9019 15 6 6.4353 3.0026 8.0140 16 7 7.0553 4.1422 8.2328 17 14 5.6745 2.0647 9.4390 18 1 6.6761 1.1254 10.0045 19 1 5.2459 3.0227 10.4896 20 1 4.4965 1.3003 8.9558 21 6 5.2172 -0.4117 4.9577 22 6 5.2596 -0.9078 3.6697 23 7 3.3365 -0.5298 0.9290 24 1 5.4532 0.6919 -1.2209 25 1 6.7517 -0.3098 0.7375 26 1 5.9312 -1.7913 1.2858 27 1 6.8015 1.6736 2.1367 28 1 6.7415 2.5623 4.4308 29 1 7.1170 4.4954 9.1340 30 1 4.7694 -0.9963 5.7478 31 1 4.8449 -1.8812 3.4526 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729240754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:10 Heat of formation + Delta-G solvation = 130.144216 kcal Electronic energy + Delta-G solvation = -18653.873374 eV Core-core repulsion = 15518.011263 eV Total energy + Delta-G solvation = -3135.862111 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38603 -39.39900 -37.27210 -36.74361 -34.30079 -32.53215 -31.72338 -30.50199 -30.24502 -26.82294 -25.22241 -23.84369 -22.45016 -22.25298 -20.67832 -18.87074 -18.06818 -17.52299 -16.63494 -16.26808 -15.36852 -15.08352 -14.88647 -14.32779 -13.97908 -13.88923 -13.62399 -13.41104 -13.11321 -13.03370 -12.88955 -12.51372 -12.35642 -11.95597 -11.57886 -11.32445 -10.93318 -10.85461 -10.42080 -10.28223 -10.14353 -9.83760 -9.55312 -9.01788 -8.45940 -7.58953 -6.56401 -4.23318 0.97247 1.53605 1.96260 1.97367 2.17019 2.41703 3.13422 3.17251 3.22391 3.31709 3.35024 4.11961 4.18580 4.36985 4.42856 4.67074 4.86793 4.95688 5.05235 5.15480 5.38710 5.55763 5.63771 5.82959 5.94078 6.11874 6.34500 6.47042 6.57942 6.81507 6.97656 7.07979 7.11610 7.41111 7.61560 7.63047 7.87102 8.77756 9.37438 10.50436 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025456 B = 0.003958 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.652207 B = 7072.902829 C = 7461.122307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C 0.315 3.685 3 C 0.282 3.718 4 N -0.517 5.517 5 C 0.262 3.738 6 N -0.351 5.351 7 C 0.182 3.818 8 C -0.219 4.219 9 C -0.049 4.049 10 C -0.226 4.226 11 C 0.172 3.828 12 O -0.209 6.209 13 C -0.393 4.393 14 H 0.108 0.892 15 C 0.066 3.934 16 N -0.872 5.872 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.259 1.259 21 C -0.196 4.196 22 C -0.038 4.038 23 N -0.241 5.241 24 H 0.230 0.770 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.135 0.865 29 H 0.282 0.718 30 H 0.120 0.880 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -9.064 -14.359 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.051 5.051 2 C -0.004 4.004 3 C 0.000 4.000 4 N -0.245 5.245 5 C -0.034 4.034 6 N -0.143 5.143 7 C 0.063 3.937 8 C -0.221 4.221 9 C -0.067 4.067 10 C -0.246 4.246 11 C 0.118 3.882 12 O -0.113 6.113 13 C -0.468 4.468 14 H 0.126 0.874 15 C -0.139 4.139 16 N -0.509 5.509 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.183 1.183 21 C -0.216 4.216 22 C -0.057 4.057 23 N -0.075 5.075 24 H 0.246 0.754 25 H 0.129 0.871 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.153 0.847 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.998 -9.182 -13.592 16.433 hybrid contribution 0.653 0.043 0.646 0.920 sum -0.345 -9.139 -12.945 15.850 Atomic orbital electron populations 1.81288 1.10438 1.06923 1.06500 1.22963 0.89176 0.94225 0.94082 1.18118 0.88484 1.01322 0.92066 1.70512 1.00624 1.25084 1.28268 1.26134 0.96373 0.93650 0.87268 1.51179 1.05585 1.40610 1.16884 1.20774 0.81149 1.00957 0.90832 1.19065 1.11867 0.98015 0.93145 1.20624 0.96471 0.93703 0.95947 1.21237 1.07955 1.02662 0.92698 1.19207 0.92324 0.91753 0.84899 1.83579 1.65470 1.38016 1.24199 1.20801 1.34064 0.95454 0.96492 0.87435 1.24498 0.95840 0.95691 0.97824 1.69638 1.39845 1.18146 1.23258 0.86174 0.80589 0.79626 0.80534 1.19693 1.20575 1.18269 1.20216 1.08722 0.95357 0.97271 1.20474 0.95360 0.98322 0.91521 1.78522 0.87762 1.21338 1.19841 0.75410 0.87131 0.88517 0.87147 0.84715 0.90792 0.86239 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.51 18.54 41.84 0.78 -4.73 16 2 C 0.32 4.36 16.01 -22.47 -0.36 4.00 16 3 C 0.28 3.74 7.82 -158.51 -1.24 2.51 16 4 N -0.52 -6.12 11.22 -13.79 -0.15 -6.27 16 5 C 0.26 2.21 12.61 -90.67 -1.14 1.07 16 6 N -0.35 -3.61 3.68 -63.82 -0.24 -3.84 16 7 C 0.18 1.55 6.67 -5.19 -0.03 1.52 16 8 C -0.22 -2.93 5.35 -104.57 -0.56 -3.48 16 9 C -0.05 -0.74 9.69 -39.61 -0.38 -1.12 16 10 C -0.23 -4.43 9.17 -39.40 -0.36 -4.79 16 11 C 0.17 3.70 6.65 -39.11 -0.26 3.44 16 12 O -0.21 -5.26 8.59 0.04 0.00 -5.26 16 13 C -0.39 -10.59 9.95 30.89 0.31 -10.29 16 14 H 0.11 2.94 5.44 -52.49 -0.29 2.66 16 15 C 0.07 1.78 5.49 -17.51 -0.10 1.69 16 16 N -0.87 -24.29 13.96 55.48 0.77 -23.51 16 17 Si 0.91 20.92 28.62 -169.99 -4.86 16.06 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.20 -3.60 9.99 -39.40 -0.39 -3.99 16 22 C -0.04 -0.57 9.69 -39.61 -0.38 -0.95 16 23 N -0.24 -3.26 12.61 30.96 0.39 -2.87 16 24 H 0.23 0.67 8.06 -52.49 -0.42 0.25 16 25 H 0.11 0.54 8.03 -51.93 -0.42 0.12 16 26 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.14 2.81 5.64 -52.49 -0.30 2.51 16 29 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 31 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -31.29 295.34 -6.01 -37.30 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -2.24 Total: -0.92 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -4.91 Total: -10.40 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 1.55 Total: -41.23 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.29 -6.01 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729240754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.448 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds