Wall clock time and date at job start Mon Mar 30 2020 00:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.34187 * 125.67177 * 119.46003 * 3 2 1 5 5 C 1.30526 * 109.79465 * 179.97438 * 4 3 2 6 6 N 1.34692 * 108.34940 * 359.97438 * 5 4 3 7 7 C 1.46498 * 126.73538 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47235 * 124.99875 * 7 6 5 9 9 C 1.38305 * 119.92910 * 270.25475 * 8 7 6 10 10 C 1.38104 * 120.06272 * 180.25358 * 9 8 7 11 11 C 1.38874 * 119.93265 * 359.47314 * 10 9 8 12 12 O 1.35749 * 120.06890 * 180.29770 * 11 10 9 13 13 C 1.34834 * 117.00013 * 354.46142 * 12 11 10 14 14 H 1.07996 * 120.00021 * 5.05939 * 13 12 11 15 15 C 1.38654 * 119.99707 * 185.05824 * 13 12 11 16 16 N 1.31563 * 119.99570 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00407 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47217 * 90.00112 * 17 15 13 19 19 H 1.48504 * 109.47173 * 209.99833 * 17 15 13 20 20 H 1.48502 * 109.47283 * 329.99797 * 17 15 13 21 21 C 1.38882 * 119.86301 * 0.27303 * 11 10 9 22 22 C 1.38094 * 119.92975 * 0.02562 * 21 11 10 23 23 N 1.31722 * 125.68003 * 299.73891 * 3 2 1 24 24 H 1.08002 * 125.82316 * 179.97438 * 5 4 3 25 25 H 1.09006 * 109.47116 * 5.00025 * 7 6 5 26 26 H 1.08998 * 109.47244 * 245.00179 * 7 6 5 27 27 H 1.07990 * 119.96792 * 0.02562 * 9 8 7 28 28 H 1.08000 * 120.02708 * 179.74272 * 10 9 8 29 29 H 0.96992 * 119.99813 * 179.97438 * 16 15 13 30 30 H 1.08005 * 120.03486 * 180.02562 * 21 11 10 31 31 H 1.08006 * 119.96524 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3502 0.5371 -0.9491 5 6 4.6058 0.3625 -0.6380 6 7 4.6642 -0.2984 0.5342 7 6 5.8751 -0.7032 1.2525 8 6 5.8315 -0.1592 2.6572 9 6 6.3593 1.0897 2.9302 10 6 6.3255 1.5887 4.2175 11 6 5.7510 0.8398 5.2361 12 8 5.7109 1.3303 6.5013 13 6 6.3468 2.4979 6.7256 14 1 6.7870 3.0400 5.9019 15 6 6.4353 3.0026 8.0140 16 7 7.0553 4.1422 8.2328 17 14 5.6745 2.0647 9.4390 18 1 6.6761 1.1254 10.0045 19 1 5.2459 3.0227 10.4896 20 1 4.4965 1.3003 8.9558 21 6 5.2172 -0.4117 4.9577 22 6 5.2596 -0.9078 3.6697 23 7 3.3365 -0.5298 0.9290 24 1 5.4532 0.6919 -1.2209 25 1 6.7517 -0.3098 0.7375 26 1 5.9312 -1.7913 1.2858 27 1 6.8015 1.6736 2.1367 28 1 6.7415 2.5623 4.4308 29 1 7.1170 4.4954 9.1340 30 1 4.7694 -0.9963 5.7478 31 1 4.8449 -1.8812 3.4526 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729240754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:09 Heat of formation + Delta-G solvation = 110.739281 kcal Electronic energy + Delta-G solvation = -18654.714835 eV Core-core repulsion = 15518.011263 eV Total energy + Delta-G solvation = -3136.703572 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.20836 -40.92223 -38.69059 -37.86512 -35.31770 -34.42925 -32.57488 -31.86989 -31.46178 -28.11941 -26.81491 -24.86047 -23.70804 -23.23427 -21.97061 -19.92447 -19.68872 -19.16033 -17.50896 -17.25248 -16.65539 -16.20967 -16.04959 -15.82787 -15.65079 -15.26843 -14.77929 -14.51950 -14.41611 -14.22026 -14.12701 -14.08289 -13.65824 -13.14262 -12.95764 -12.56009 -12.49883 -12.42006 -11.97542 -11.31782 -11.29518 -11.01647 -10.92863 -10.67727 -9.82234 -9.11488 -8.53643 -6.26294 0.03820 0.39522 0.56771 1.11410 1.20874 1.29518 1.31928 1.42787 1.49153 2.24782 2.31502 2.37688 2.76331 3.04303 3.12670 3.53546 3.85209 3.95352 4.10165 4.14960 4.42280 4.51369 4.63526 4.72421 4.78874 4.92533 5.03875 5.22601 5.31624 5.53669 5.66024 5.76863 5.82697 5.88077 6.07520 6.20299 6.80888 6.81034 7.54874 8.57612 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025456 B = 0.003958 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.652207 B = 7072.902829 C = 7461.122307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.325 3.675 3 C 0.272 3.728 4 N -0.542 5.542 5 C 0.287 3.713 6 N -0.354 5.354 7 C 0.181 3.819 8 C -0.185 4.185 9 C -0.044 4.044 10 C -0.246 4.246 11 C 0.128 3.872 12 O -0.246 6.246 13 C -0.400 4.400 14 H 0.085 0.915 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.267 1.267 21 C -0.204 4.204 22 C -0.036 4.036 23 N -0.274 5.274 24 H 0.288 0.712 25 H 0.166 0.834 26 H 0.123 0.877 27 H 0.153 0.847 28 H 0.109 0.891 29 H 0.285 0.715 30 H 0.121 0.879 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -11.231 -17.547 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C 0.006 3.994 3 C -0.010 4.010 4 N -0.271 5.271 5 C -0.008 4.008 6 N -0.145 5.145 7 C 0.063 3.937 8 C -0.187 4.187 9 C -0.063 4.063 10 C -0.265 4.265 11 C 0.079 3.921 12 O -0.153 6.153 13 C -0.476 4.476 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.560 5.560 17 Si 0.789 3.211 18 H -0.188 1.188 19 H -0.193 1.193 20 H -0.191 1.191 21 C -0.224 4.224 22 C -0.055 4.055 23 N -0.108 5.108 24 H 0.303 0.697 25 H 0.183 0.817 26 H 0.141 0.859 27 H 0.170 0.830 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.139 0.861 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.137 -11.385 -16.827 20.317 hybrid contribution 0.407 0.504 1.168 1.336 sum 0.271 -10.881 -15.659 19.070 Atomic orbital electron populations 1.81285 1.11278 1.07967 1.07488 1.23207 0.89585 0.93402 0.93236 1.18072 0.88089 1.02054 0.92759 1.70527 1.02058 1.26000 1.28529 1.27266 0.96614 0.90681 0.86220 1.51120 1.04650 1.41042 1.17709 1.21159 0.82076 1.02811 0.87691 1.19682 1.06967 0.96224 0.95825 1.21065 0.95711 0.94675 0.94809 1.21312 1.08593 1.01924 0.94688 1.19796 0.94432 0.93499 0.84393 1.83525 1.67749 1.37721 1.26339 1.20728 1.34340 0.96355 0.96210 0.89734 1.25242 0.96639 0.96624 1.00104 1.69717 1.42513 1.19858 1.23921 0.85270 0.79481 0.78537 0.77773 1.18785 1.19260 1.19139 1.20512 1.08354 0.94273 0.99213 1.20952 0.94498 0.99690 0.90356 1.78446 0.89482 1.22256 1.20647 0.69698 0.81672 0.85919 0.82969 0.87344 0.90511 0.86068 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -11.73 18.54 19.00 0.35 -11.37 16 2 C 0.33 8.69 16.01 88.33 1.41 10.11 16 3 C 0.27 6.55 7.82 135.87 1.06 7.61 16 4 N -0.54 -10.76 11.22 -197.53 -2.22 -12.98 16 5 C 0.29 3.07 12.61 180.37 2.27 5.34 16 6 N -0.35 -5.19 3.68 -355.82 -1.31 -6.50 16 7 C 0.18 1.75 6.67 85.63 0.57 2.32 16 8 C -0.19 -4.04 5.35 -19.83 -0.11 -4.14 16 9 C -0.04 -1.18 9.69 22.25 0.22 -0.97 16 10 C -0.25 -9.75 9.17 22.39 0.21 -9.54 16 11 C 0.13 5.71 6.65 22.58 0.15 5.86 16 12 O -0.25 -13.12 8.59 -22.77 -0.20 -13.31 16 13 C -0.40 -23.05 9.95 67.92 0.68 -22.38 16 14 H 0.09 5.05 5.44 -2.91 -0.02 5.03 16 15 C 0.01 0.73 5.49 84.83 0.47 1.20 16 16 N -0.92 -53.99 13.96 21.61 0.30 -53.69 16 17 Si 0.97 44.98 28.62 68.60 1.96 46.94 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.20 -7.37 9.99 22.39 0.22 -7.15 16 22 C -0.04 -0.97 9.69 22.25 0.22 -0.75 16 23 N -0.27 -6.44 12.61 -55.97 -0.71 -7.14 16 24 H 0.29 -0.76 8.06 -2.91 -0.02 -0.78 16 25 H 0.17 0.00 8.03 -2.38 -0.02 -0.01 16 26 H 0.12 0.75 8.08 -2.39 -0.02 0.73 16 27 H 0.15 2.81 8.06 -2.92 -0.02 2.79 16 28 H 0.11 4.83 5.64 -2.91 -0.02 4.82 16 29 H 0.29 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -76.71 295.34 6.74 -69.97 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.19 Total: 0.57 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 7.37 Total: -12.49 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -3.58 Total: -91.68 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.20 Total: -13.31 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.96 Total: 46.94 kcal Total: -76.71 6.74 -69.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729240754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.710 kcal (2) G-P(sol) polarization free energy of solvation -76.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds