Wall clock time and date at job start Mon Mar 30 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86807 * 119.99692 * 2 1 4 4 H 1.48489 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46967 * 300.00172 * 3 2 1 6 6 H 1.48507 * 109.46876 * 59.99607 * 3 2 1 7 7 C 1.38944 * 120.00608 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00490 * 201.14024 * 7 2 1 9 9 N 1.37100 * 119.99901 * 21.14515 * 7 2 1 10 10 C 1.46498 * 119.99853 * 16.25262 * 9 7 2 11 11 C 1.50701 * 109.47418 * 264.14850 * 10 9 7 12 12 O 1.20831 * 119.99927 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00551 * 180.02562 * 11 10 9 14 14 C 1.34766 * 119.99992 * 196.25788 * 9 7 2 15 15 O 1.21292 * 120.00537 * 359.97438 * 14 9 7 16 16 C 1.50703 * 120.00034 * 179.97438 * 14 9 7 17 17 N 1.46502 * 109.47237 * 179.97438 * 16 14 9 18 18 C 1.46764 * 124.34946 * 90.00159 * 17 16 14 19 19 C 1.54483 * 105.54836 * 197.07666 * 18 17 16 20 20 C 1.54631 * 101.76589 * 334.54129 * 19 18 17 21 21 C 1.34619 * 124.46519 * 270.02494 * 17 16 14 22 22 O 1.21277 * 124.91258 * 359.55441 * 21 17 16 23 23 H 0.96998 * 120.00514 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47306 * 24.14691 * 10 9 7 25 25 H 1.08998 * 109.47464 * 144.15100 * 10 9 7 26 26 H 0.96697 * 117.00517 * 179.97438 * 13 11 10 27 27 H 1.09004 * 109.47349 * 59.99721 * 16 14 9 28 28 H 1.08998 * 109.47088 * 299.99914 * 16 14 9 29 29 H 1.08994 * 110.24876 * 78.03374 * 18 17 16 30 30 H 1.09000 * 110.24448 * 316.11801 * 18 17 16 31 31 H 1.09000 * 110.96642 * 92.65583 * 19 18 17 32 32 H 1.08993 * 110.96967 * 216.42152 * 19 18 17 33 33 H 1.08998 * 110.48968 * 143.47712 * 20 19 18 34 34 H 1.09000 * 110.48394 * 266.12055 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3467 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3966 1.2125 7 6 2.0090 -1.2032 0.0005 8 1 3.0344 -1.2345 0.3378 9 7 1.3928 -2.3508 -0.4273 10 6 0.1552 -2.2707 -1.2070 11 6 -1.0288 -2.4276 -0.2878 12 8 -0.8564 -2.5893 0.8971 13 8 -2.2748 -2.3878 -0.7854 14 6 1.9256 -3.5526 -0.1304 15 8 2.9505 -3.6190 0.5148 16 6 1.2480 -4.8140 -0.6001 17 7 2.0179 -5.9775 -0.1530 18 6 1.8065 -6.6693 1.1240 19 6 3.0821 -7.5094 1.3559 20 6 3.5889 -7.7188 -0.0899 21 6 3.0107 -6.5509 -0.8585 22 8 3.3871 -6.1842 -1.9515 23 1 -0.4851 0.8400 -0.0004 24 1 0.1020 -1.3030 -1.7059 25 1 0.1436 -3.0652 -1.9531 26 1 -3.0021 -2.4935 -0.1570 27 1 1.1917 -4.8126 -1.6887 28 1 0.2416 -4.8623 -0.1844 29 1 0.9335 -7.3188 1.0612 30 1 1.6803 -5.9452 1.9289 31 1 3.8109 -6.9564 1.9485 32 1 2.8412 -8.4624 1.8267 33 1 4.6782 -7.6933 -0.1198 34 1 3.2173 -8.6614 -0.4916 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:06 Heat of formation + Delta-G solvation = -165.690066 kcal Electronic energy + Delta-G solvation = -21644.684357 eV Core-core repulsion = 18156.392238 eV Total energy + Delta-G solvation = -3488.292119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.63792 -40.96611 -39.78739 -37.44523 -36.99939 -36.37385 -34.10234 -33.44550 -29.68607 -28.83204 -28.44568 -26.32511 -22.95711 -22.74424 -21.66219 -20.08444 -19.09592 -18.77657 -18.38974 -17.64222 -17.45678 -17.31723 -16.54349 -16.24751 -16.21857 -15.82048 -15.36597 -14.74504 -14.52835 -14.51850 -13.87978 -13.75710 -13.56035 -13.43242 -13.32361 -13.03388 -12.72402 -12.42784 -12.30198 -12.17265 -12.13347 -11.86189 -11.57406 -11.00374 -10.89069 -10.80862 -9.93196 -9.67389 -8.48937 -6.00907 1.30754 1.39014 1.47660 1.55594 1.64081 1.80273 2.01094 2.24743 2.48883 2.89911 3.07039 3.43629 3.64317 3.80119 4.02766 4.10762 4.13138 4.25162 4.31831 4.63886 4.70604 4.73162 4.87588 4.88424 5.06980 5.24099 5.39577 5.40347 5.92781 5.94667 6.15870 6.32776 7.03495 7.11803 7.23936 7.41723 7.83963 8.57434 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.006498 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.310216 B = 4307.788650 C = 4988.173612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.003 3.997 3 Si 0.991 3.009 4 H -0.277 1.277 5 H -0.259 1.259 6 H -0.280 1.280 7 C -0.343 4.343 8 H 0.074 0.926 9 N -0.442 5.442 10 C 0.137 3.863 11 C 0.499 3.501 12 O -0.546 6.546 13 O -0.516 6.516 14 C 0.430 3.570 15 O -0.614 6.614 16 C 0.121 3.879 17 N -0.604 5.604 18 C 0.095 3.905 19 C -0.117 4.117 20 C -0.139 4.139 21 C 0.501 3.499 22 O -0.589 6.589 23 H 0.277 0.723 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.416 0.584 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 -12.266 -0.972 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.198 4.198 3 Si 0.815 3.185 4 H -0.202 1.202 5 H -0.183 1.183 6 H -0.206 1.206 7 C -0.470 4.470 8 H 0.092 0.908 9 N -0.161 5.161 10 C 0.011 3.989 11 C 0.342 3.658 12 O -0.435 6.435 13 O -0.328 6.328 14 C 0.219 3.781 15 O -0.500 6.500 16 C -0.005 4.005 17 N -0.336 5.336 18 C -0.027 4.027 19 C -0.154 4.154 20 C -0.178 4.178 21 C 0.291 3.709 22 O -0.470 6.470 23 H 0.087 0.913 24 H 0.140 0.860 25 H 0.136 0.864 26 H 0.275 0.725 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.664 -11.904 -1.182 12.511 hybrid contribution -0.211 1.483 0.721 1.662 sum -3.875 -10.421 -0.461 11.128 Atomic orbital electron populations 1.69849 1.06635 1.28848 1.47490 1.25922 0.96210 1.02162 0.95548 0.84925 0.78114 0.77069 0.78427 1.20224 1.18297 1.20587 1.19599 0.97076 0.85317 1.45008 0.90829 1.43602 1.20826 1.05035 1.46684 1.20895 0.80253 1.06182 0.91554 1.23644 0.84219 0.69736 0.88237 1.90609 1.86451 1.47190 1.19281 1.84449 1.16606 1.85347 1.46392 1.21419 0.87482 0.85850 0.83299 1.90471 1.27738 1.87145 1.44626 1.21099 0.95118 0.82849 1.01473 1.48100 1.35742 1.28285 1.21505 1.22388 1.00823 0.95703 0.83793 1.22624 0.95408 1.01992 0.95381 1.22342 1.02996 0.96842 0.95655 1.22035 0.78636 0.85260 0.84966 1.90645 1.63797 1.69478 1.23070 0.91319 0.85998 0.86389 0.72457 0.87363 0.87028 0.87461 0.92537 0.91290 0.84653 0.87715 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.80 9.25 21.66 0.20 -45.60 16 2 C 0.00 0.18 4.89 84.92 0.42 0.60 16 3 Si 0.99 42.56 29.60 68.60 2.03 44.59 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.34 -19.72 9.35 84.04 0.79 -18.93 16 8 H 0.07 4.63 7.36 -2.91 -0.02 4.60 16 9 N -0.44 -22.98 2.18 -639.62 -1.39 -24.37 16 10 C 0.14 5.81 4.97 85.63 0.43 6.23 16 11 C 0.50 20.76 5.87 71.24 0.42 21.17 16 12 O -0.55 -27.16 16.81 21.95 0.37 -26.79 16 13 O -0.52 -16.33 13.42 -51.41 -0.69 -17.02 16 14 C 0.43 22.05 7.49 87.66 0.66 22.70 16 15 O -0.61 -36.43 16.07 -3.07 -0.05 -36.48 16 16 C 0.12 4.68 5.03 85.63 0.43 5.11 16 17 N -0.60 -21.08 2.43 -822.01 -1.99 -23.08 16 18 C 0.09 2.41 7.34 86.83 0.64 3.04 16 19 C -0.12 -2.21 7.18 31.65 0.23 -1.98 16 20 C -0.14 -3.05 6.86 30.59 0.21 -2.84 16 21 C 0.50 17.88 8.03 87.87 0.71 18.59 16 22 O -0.59 -26.39 17.60 -3.02 -0.05 -26.45 16 23 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 24 H 0.12 5.42 6.34 -2.39 -0.02 5.41 16 25 H 0.12 3.95 6.69 -2.39 -0.02 3.93 16 26 H 0.42 9.47 9.10 -74.06 -0.67 8.80 16 27 H 0.11 3.88 7.21 -2.38 -0.02 3.86 16 28 H 0.11 3.82 7.52 -2.39 -0.02 3.81 16 29 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -83.96 297.07 3.80 -80.15 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.47 Total: 21.34 kcal Atomic # 6 Polarization: 48.77 SS G_CDS: 4.91 Total: 53.69 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -3.19 Total: -93.04 kcal Atomic # 8 Polarization: -106.31 SS G_CDS: -0.42 Total: -106.73 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -83.96 3.80 -80.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.536 kcal (2) G-P(sol) polarization free energy of solvation -83.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds