Wall clock time and date at job start Mon Mar 30 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00424 * 2 1 4 4 H 1.48493 * 109.47377 * 240.00545 * 3 2 1 5 5 H 1.48503 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46991 * 119.99931 * 3 2 1 7 7 C 1.38949 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00210 * 157.67527 * 7 2 1 9 9 N 1.37105 * 119.99734 * 337.67676 * 7 2 1 10 10 C 1.46498 * 120.00029 * 342.76622 * 9 7 2 11 11 C 1.50710 * 109.46692 * 91.15884 * 10 9 7 12 12 O 1.20823 * 120.00041 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99378 * 179.97438 * 11 10 9 14 14 C 1.34774 * 119.99866 * 162.77184 * 9 7 2 15 15 O 1.21289 * 120.00020 * 182.40494 * 14 9 7 16 16 C 1.50706 * 120.00125 * 2.40005 * 14 9 7 17 17 H 1.09002 * 109.60090 * 332.64010 * 16 14 9 18 18 C 1.53347 * 109.73705 * 212.22787 * 16 14 9 19 19 C 1.53073 * 108.42051 * 172.63188 * 18 16 14 20 20 C 1.50178 * 109.89225 * 48.90284 * 19 18 16 21 21 O 1.21277 * 118.24593 * 162.43519 * 20 19 18 22 22 N 1.33096 * 123.42430 * 342.22960 * 20 19 18 23 23 C 1.45751 * 124.30467 * 2.60676 * 22 20 19 24 24 H 0.97004 * 119.99501 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47145 * 211.15477 * 10 9 7 26 26 H 1.08999 * 109.46996 * 331.16197 * 10 9 7 27 27 H 0.96704 * 116.99323 * 180.02562 * 13 11 10 28 28 H 1.08989 * 109.67481 * 292.36673 * 18 16 14 29 29 H 1.09006 * 109.67110 * 52.90176 * 18 16 14 30 30 H 1.08997 * 109.39757 * 169.03124 * 19 18 16 31 31 H 1.08999 * 109.40114 * 288.77028 * 19 18 16 32 32 H 0.96994 * 117.73966 * 182.38699 * 22 20 19 33 33 H 1.08998 * 109.29980 * 220.38824 * 23 22 20 34 34 H 1.09000 * 109.30013 * 100.80953 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0280 -1.2383 -0.3558 9 7 1.4003 -2.3464 0.4500 10 6 0.1888 -2.2573 1.2688 11 6 -1.0248 -2.2942 0.3759 12 8 -0.8913 -2.3851 -0.8215 13 8 -2.2539 -2.2261 0.9110 14 6 1.9167 -3.5519 0.1396 15 8 1.3544 -4.5639 0.5012 16 6 3.1929 -3.6426 -0.6568 17 1 3.2949 -2.7584 -1.2860 18 6 3.1669 -4.8992 -1.5354 19 6 4.3844 -4.8663 -2.4626 20 6 5.6239 -4.5697 -1.6682 21 8 6.6999 -4.8216 -2.1679 22 7 5.6029 -4.0415 -0.4468 23 6 4.3862 -3.7353 0.2950 24 1 -0.4849 0.8401 0.0004 25 1 0.1558 -3.0981 1.9615 26 1 0.1980 -1.3234 1.8309 27 1 -3.0015 -2.2538 0.2982 28 1 3.2088 -5.7879 -0.9060 29 1 2.2532 -4.9125 -2.1297 30 1 4.4918 -5.8336 -2.9535 31 1 4.2441 -4.0924 -3.2172 32 1 6.4541 -3.8512 -0.0225 33 1 4.5093 -2.7837 0.8121 34 1 4.2029 -4.5219 1.0269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:26 Heat of formation + Delta-G solvation = -179.679496 kcal Electronic energy + Delta-G solvation = -21686.597990 eV Core-core repulsion = 18197.699244 eV Total energy + Delta-G solvation = -3488.898746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66738 -40.90429 -39.90099 -37.36979 -36.82517 -36.32662 -33.97858 -33.50718 -31.35911 -29.32444 -26.75591 -25.58857 -24.24418 -22.57902 -21.22533 -20.24011 -18.96778 -18.74745 -18.09838 -17.81886 -17.38369 -17.01155 -16.51539 -16.19234 -16.12407 -15.87243 -15.39807 -14.94310 -14.63269 -14.54876 -14.23318 -13.60457 -13.52607 -13.21278 -12.92062 -12.83275 -12.61465 -12.43673 -12.17381 -12.08761 -12.01821 -11.73845 -11.42824 -10.94908 -10.82194 -10.45111 -10.10882 -9.87428 -8.39262 -5.93108 1.42444 1.52551 1.60069 1.60445 1.78670 1.89845 2.20652 2.37669 2.58669 2.87250 3.15589 3.63545 3.78210 3.84165 3.93611 4.33693 4.37407 4.45491 4.55551 4.67291 4.70858 4.82518 4.87559 4.95357 5.08893 5.24618 5.46964 5.69684 5.82082 6.01430 6.28661 6.31149 7.07914 7.19240 7.43433 7.52151 7.87165 8.67687 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.007289 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.194778 B = 3840.396983 C = 4862.228945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C -0.001 4.001 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.353 4.353 8 H 0.121 0.879 9 N -0.435 5.435 10 C 0.154 3.846 11 C 0.502 3.498 12 O -0.546 6.546 13 O -0.527 6.527 14 C 0.470 3.530 15 O -0.624 6.624 16 C -0.106 4.106 17 H 0.100 0.900 18 C -0.096 4.096 19 C -0.127 4.127 20 C 0.521 3.479 21 O -0.605 6.605 22 N -0.701 5.701 23 C 0.133 3.867 24 H 0.271 0.729 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.410 0.590 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.408 0.592 33 H 0.101 0.899 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -1.447 2.565 4.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.203 4.203 3 Si 0.814 3.186 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.138 0.862 9 N -0.152 5.152 10 C 0.028 3.972 11 C 0.344 3.656 12 O -0.434 6.434 13 O -0.339 6.339 14 C 0.260 3.740 15 O -0.512 6.512 16 C -0.127 4.127 17 H 0.118 0.882 18 C -0.134 4.134 19 C -0.166 4.166 20 C 0.309 3.691 21 O -0.488 6.488 22 N -0.352 5.352 23 C 0.008 3.992 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.132 0.868 27 H 0.269 0.731 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.245 0.755 33 H 0.119 0.881 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.965 -1.951 2.355 5.007 hybrid contribution -0.525 1.153 -0.414 1.333 sum 3.440 -0.798 1.940 4.029 Atomic orbital electron populations 1.69849 1.07552 1.28483 1.46901 1.26045 0.95728 1.02911 0.95641 0.85033 0.77733 0.76431 0.79438 1.19595 1.21800 1.18304 1.19972 0.98653 0.84619 1.44702 0.86166 1.43672 1.21587 1.05888 1.44091 1.20440 0.81336 1.03840 0.91598 1.23656 0.84323 0.69248 0.88388 1.90525 1.86795 1.47525 1.18581 1.84445 1.17011 1.86426 1.46032 1.20435 0.88566 0.82495 0.82546 1.90531 1.65360 1.36140 1.59138 1.21338 0.92408 1.01172 0.97808 0.88229 1.21395 0.97842 0.96861 0.97295 1.21653 0.90494 1.06074 0.98388 1.20390 0.91285 0.75511 0.81876 1.90712 1.32656 1.55651 1.69743 1.45281 1.10511 1.62663 1.16706 1.21208 0.81989 1.03009 0.92952 0.91896 0.88681 0.86826 0.73091 0.90790 0.91529 0.86513 0.87093 0.75521 0.88126 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.44 8.75 21.66 0.19 -43.25 16 2 C 0.00 -0.02 4.86 84.93 0.41 0.39 16 3 Si 0.99 36.19 29.61 68.60 2.03 38.22 16 4 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.35 -15.72 8.93 84.04 0.75 -14.97 16 8 H 0.12 4.85 6.15 -2.91 -0.02 4.83 16 9 N -0.43 -19.59 2.11 -639.59 -1.35 -20.94 16 10 C 0.15 6.78 5.21 85.64 0.45 7.22 16 11 C 0.50 23.26 6.27 71.24 0.45 23.70 16 12 O -0.55 -29.31 16.43 21.97 0.36 -28.95 16 13 O -0.53 -19.84 13.42 -51.40 -0.69 -20.53 16 14 C 0.47 20.12 6.65 87.66 0.58 20.70 16 15 O -0.62 -29.72 16.01 -3.06 -0.05 -29.77 16 16 C -0.11 -3.56 1.88 -11.45 -0.02 -3.58 16 17 H 0.10 3.48 6.20 -2.39 -0.01 3.47 16 18 C -0.10 -2.93 4.84 30.74 0.15 -2.79 16 19 C -0.13 -3.31 6.03 29.71 0.18 -3.13 16 20 C 0.52 15.36 7.71 87.75 0.68 16.04 16 21 O -0.60 -21.76 17.78 -3.02 -0.05 -21.81 16 22 N -0.70 -17.77 5.43 -467.67 -2.54 -20.31 16 23 C 0.13 3.57 6.47 86.49 0.56 4.13 16 24 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 25 H 0.10 3.91 7.49 -2.39 -0.02 3.89 16 26 H 0.11 4.95 6.78 -2.39 -0.02 4.93 16 27 H 0.41 11.87 9.10 -74.05 -0.67 11.20 16 28 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.41 8.82 8.79 -92.71 -0.82 8.00 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 34 H 0.08 2.00 8.11 -2.39 -0.02 1.98 16 Total: -1.00 -66.33 291.30 1.76 -64.57 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.32 Total: 35.05 kcal Atomic # 6 Polarization: 43.53 SS G_CDS: 4.18 Total: 47.71 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.70 Total: -84.50 kcal Atomic # 8 Polarization: -100.63 SS G_CDS: -0.43 Total: -101.06 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -66.33 1.76 -64.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.107 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds