Wall clock time and date at job start Mon Mar 30 2020 00:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48506 * 109.46995 * 240.00222 * 3 2 1 5 5 H 1.48499 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47660 * 119.99949 * 3 2 1 7 7 C 1.38666 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00446 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.76204 * 100.00062 * 180.02562 * 9 7 2 11 11 N 1.31397 * 126.49338 * 0.14500 * 10 9 7 12 12 N 1.28526 * 109.79743 * 180.31368 * 11 10 9 13 13 C 1.30490 * 110.06344 * 359.72738 * 12 11 10 14 14 C 1.50696 * 126.31908 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.48322 * 164.99314 * 14 13 12 16 16 C 1.53083 * 109.48019 * 285.03049 * 14 13 12 17 17 C 1.53182 * 109.16566 * 177.59341 * 16 14 13 18 18 C 1.53183 * 109.03050 * 303.01847 * 17 16 14 19 19 C 1.53087 * 109.16345 * 56.98321 * 18 17 16 20 20 O 1.42907 * 109.41518 * 302.38384 * 19 18 17 21 21 N 1.36483 * 107.36343 * 359.97438 * 13 12 11 22 22 N 1.36605 * 127.11968 * 180.02562 * 21 13 12 23 23 H 0.97002 * 120.00057 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.52527 * 297.49493 * 16 14 13 25 25 H 1.08998 * 109.52584 * 57.68548 * 16 14 13 26 26 H 1.08999 * 109.54664 * 183.15515 * 17 16 14 27 27 H 1.08997 * 109.61891 * 62.92822 * 17 16 14 28 28 H 1.08996 * 109.52390 * 297.07104 * 18 17 16 29 29 H 1.09007 * 109.56768 * 176.91751 * 18 17 16 30 30 H 1.09003 * 109.48336 * 182.40734 * 19 18 17 31 31 H 1.09000 * 109.48498 * 62.37267 * 19 18 17 32 32 H 1.00896 * 111.00330 * 90.00004 * 22 21 13 33 33 H 1.00902 * 111.00023 * 213.96254 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6965 1.2124 7 6 2.0098 -1.2008 -0.0005 8 1 3.0898 -1.2009 -0.0010 9 16 1.1288 -2.7268 -0.0005 10 6 2.4786 -3.8594 -0.0005 11 7 3.7562 -3.5525 0.0021 12 7 4.4620 -4.6267 -0.0054 13 6 3.6834 -5.6738 -0.0075 14 6 4.1252 -7.1145 -0.0152 15 1 3.2838 -7.7543 0.2508 16 6 4.6282 -7.4868 -1.4123 17 6 5.1311 -8.9336 -1.3969 18 6 6.2220 -9.0718 -0.3303 19 6 5.6574 -8.6384 1.0250 20 8 5.1793 -7.2949 0.9328 21 7 2.3950 -5.2235 -0.0001 22 7 1.2574 -5.9797 0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 3.8132 -7.3922 -2.1301 25 1 5.4433 -6.8208 -1.6955 26 1 5.5423 -9.1872 -2.3740 27 1 4.3054 -9.6056 -1.1631 28 1 7.0693 -8.4378 -0.5916 29 1 6.5479 -10.1104 -0.2739 30 1 6.4416 -8.6940 1.7801 31 1 4.8361 -9.2982 1.3045 32 1 0.9601 -6.1841 0.9434 33 1 0.5216 -5.5269 -0.5200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743456523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:14 Heat of formation + Delta-G solvation = 39.770988 kcal Electronic energy + Delta-G solvation = -18368.761040 eV Core-core repulsion = 15364.424004 eV Total energy + Delta-G solvation = -3004.337037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.20148 -39.24521 -35.89350 -33.69833 -32.71192 -32.32078 -29.16290 -29.01937 -25.84264 -25.09202 -23.80968 -22.30743 -20.90495 -20.06559 -18.60560 -17.29792 -16.92013 -16.26321 -16.13376 -15.11055 -14.97447 -14.85359 -14.74868 -14.32258 -13.87896 -13.16077 -12.77113 -12.66941 -11.63090 -11.54655 -11.29481 -11.18270 -11.14612 -11.11012 -10.80001 -10.70179 -10.46574 -10.24036 -9.86530 -9.80667 -9.47700 -9.18911 -8.94546 -8.85621 -6.87125 -6.52243 -4.27809 2.14705 2.27296 2.93109 3.20965 3.21337 3.27960 3.43843 3.80942 3.95987 4.45008 4.71890 4.74046 4.77116 4.92278 4.92534 4.99802 5.08436 5.27360 5.35001 5.45437 5.61219 5.70896 5.78418 5.89902 6.00943 6.07876 6.16153 6.29497 6.59237 6.77814 7.19810 7.52634 7.90336 8.32577 9.00051 9.40202 10.56311 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040160 B = 0.004395 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.050435 B = 6369.224772 C = 6746.094408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.076 3.924 3 Si 0.935 3.065 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.106 0.894 9 S 0.125 5.875 10 C 0.140 3.860 11 N -0.296 5.296 12 N -0.261 5.261 13 C 0.171 3.829 14 C 0.200 3.800 15 H 0.076 0.924 16 C -0.142 4.142 17 C -0.119 4.119 18 C -0.158 4.158 19 C 0.062 3.938 20 O -0.365 6.365 21 N -0.321 5.321 22 N -0.588 5.588 23 H 0.275 0.725 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.357 0.643 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -17.489 -0.594 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.133 4.133 3 Si 0.760 3.240 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.677 4.677 8 H 0.124 0.876 9 S 0.356 5.644 10 C -0.231 4.231 11 N -0.142 5.142 12 N -0.103 5.103 13 C -0.099 4.099 14 C 0.139 3.861 15 H 0.094 0.906 16 C -0.180 4.180 17 C -0.157 4.157 18 C -0.196 4.196 19 C -0.015 4.015 20 O -0.283 6.283 21 N -0.108 5.108 22 N -0.218 5.218 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.173 0.827 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.069 -17.087 -0.840 17.585 hybrid contribution -0.225 0.916 0.336 1.002 sum 3.844 -16.171 -0.503 16.629 Atomic orbital electron populations 1.69931 1.06077 1.28654 1.46786 1.25080 0.95224 0.99683 0.93351 0.85933 0.79036 0.79400 0.79628 1.19343 1.20753 1.19349 1.23112 0.97084 0.88553 1.58992 0.87566 1.83269 0.97525 0.96441 1.87197 1.28916 1.03209 0.85855 1.05170 1.74829 0.98782 1.18303 1.22303 1.74060 1.25895 0.94348 1.15969 1.23761 0.79179 0.97249 1.09748 1.19706 0.89805 0.86963 0.89604 0.90624 1.22141 1.02445 0.97019 0.96428 1.21590 0.98424 0.96269 0.99422 1.22218 0.99387 1.01912 0.96060 1.22592 0.98416 0.83490 0.96989 1.88058 1.53050 1.27631 1.59551 1.44948 1.03646 1.03105 1.59099 1.59728 1.01525 1.39210 1.21287 0.91515 0.90585 0.90097 0.91209 0.91747 0.90710 0.90962 0.88656 0.93279 0.82671 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.32 13.22 55.48 0.73 -23.58 16 2 C 0.08 2.06 5.49 -17.48 -0.10 1.96 16 3 Si 0.94 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.53 -14.80 9.37 30.89 0.29 -14.51 16 8 H 0.11 3.09 6.93 -52.48 -0.36 2.72 16 9 S 0.12 3.05 21.55 -107.50 -2.32 0.73 16 10 C 0.14 3.28 8.12 -88.13 -0.72 2.57 16 11 N -0.30 -7.62 11.04 30.72 0.34 -7.29 16 12 N -0.26 -6.13 12.18 32.97 0.40 -5.73 16 13 C 0.17 3.35 7.06 -154.09 -1.09 2.26 16 14 C 0.20 2.99 3.13 -27.84 -0.09 2.90 16 15 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 16 C -0.14 -1.82 5.40 -26.59 -0.14 -1.96 16 17 C -0.12 -1.12 6.03 -26.54 -0.16 -1.28 16 18 C -0.16 -1.43 6.14 -26.59 -0.16 -1.59 16 19 C 0.06 0.65 6.84 37.20 0.25 0.90 16 20 O -0.37 -5.62 10.39 -35.23 -0.37 -5.98 16 21 N -0.32 -6.13 3.80 -9.90 -0.04 -6.17 16 22 N -0.59 -8.19 10.27 60.35 0.62 -7.57 16 23 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.36 4.16 9.21 -181.37 -1.67 2.49 16 33 H 0.38 4.90 8.79 -181.36 -1.59 3.31 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -32.83 297.30 -9.64 -42.47 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.56 Total: 1.13 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.91 Total: -8.76 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 2.06 Total: -50.34 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.37 Total: -5.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.32 Total: 0.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.83 -9.64 -42.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743456523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.239 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds