Wall clock time and date at job start Mon Mar 30 2020 00:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48506 * 109.46995 * 240.00222 * 3 2 1 5 5 H 1.48499 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47660 * 119.99949 * 3 2 1 7 7 C 1.38666 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00446 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.76204 * 100.00062 * 180.02562 * 9 7 2 11 11 N 1.31397 * 126.49338 * 0.14500 * 10 9 7 12 12 N 1.28526 * 109.79743 * 180.31368 * 11 10 9 13 13 C 1.30490 * 110.06344 * 359.72738 * 12 11 10 14 14 C 1.50696 * 126.31908 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.48322 * 164.99314 * 14 13 12 16 16 C 1.53083 * 109.48019 * 285.03049 * 14 13 12 17 17 C 1.53182 * 109.16566 * 177.59341 * 16 14 13 18 18 C 1.53183 * 109.03050 * 303.01847 * 17 16 14 19 19 C 1.53087 * 109.16345 * 56.98321 * 18 17 16 20 20 O 1.42907 * 109.41518 * 302.38384 * 19 18 17 21 21 N 1.36483 * 107.36343 * 359.97438 * 13 12 11 22 22 N 1.36605 * 127.11968 * 180.02562 * 21 13 12 23 23 H 0.97002 * 120.00057 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.52527 * 297.49493 * 16 14 13 25 25 H 1.08998 * 109.52584 * 57.68548 * 16 14 13 26 26 H 1.08999 * 109.54664 * 183.15515 * 17 16 14 27 27 H 1.08997 * 109.61891 * 62.92822 * 17 16 14 28 28 H 1.08996 * 109.52390 * 297.07104 * 18 17 16 29 29 H 1.09007 * 109.56768 * 176.91751 * 18 17 16 30 30 H 1.09003 * 109.48336 * 182.40734 * 19 18 17 31 31 H 1.09000 * 109.48498 * 62.37267 * 19 18 17 32 32 H 1.00896 * 111.00330 * 90.00004 * 22 21 13 33 33 H 1.00902 * 111.00023 * 213.96254 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6965 1.2124 7 6 2.0098 -1.2008 -0.0005 8 1 3.0898 -1.2009 -0.0010 9 16 1.1288 -2.7268 -0.0005 10 6 2.4786 -3.8594 -0.0005 11 7 3.7562 -3.5525 0.0021 12 7 4.4620 -4.6267 -0.0054 13 6 3.6834 -5.6738 -0.0075 14 6 4.1252 -7.1145 -0.0152 15 1 3.2838 -7.7543 0.2508 16 6 4.6282 -7.4868 -1.4123 17 6 5.1311 -8.9336 -1.3969 18 6 6.2220 -9.0718 -0.3303 19 6 5.6574 -8.6384 1.0250 20 8 5.1793 -7.2949 0.9328 21 7 2.3950 -5.2235 -0.0001 22 7 1.2574 -5.9797 0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 3.8132 -7.3922 -2.1301 25 1 5.4433 -6.8208 -1.6955 26 1 5.5423 -9.1872 -2.3740 27 1 4.3054 -9.6056 -1.1631 28 1 7.0693 -8.4378 -0.5916 29 1 6.5479 -10.1104 -0.2739 30 1 6.4416 -8.6940 1.7801 31 1 4.8361 -9.2982 1.3045 32 1 0.9601 -6.1841 0.9434 33 1 0.5216 -5.5269 -0.5200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743456523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:14 Heat of formation + Delta-G solvation = 17.031181 kcal Electronic energy + Delta-G solvation = -18369.747112 eV Core-core repulsion = 15364.424004 eV Total energy + Delta-G solvation = -3005.323109 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.87209 -40.25539 -37.38965 -34.78610 -34.61444 -33.52829 -30.68404 -30.38897 -27.85377 -26.23719 -24.79039 -24.00377 -22.23828 -21.07270 -20.36680 -18.94632 -18.35564 -17.61535 -17.22655 -16.99882 -16.61923 -15.98829 -15.94610 -15.43911 -14.98610 -14.78379 -13.77541 -13.62626 -13.53348 -13.06238 -13.02206 -12.79534 -12.50411 -12.32567 -12.05770 -12.01213 -11.79742 -11.64414 -11.54861 -11.29566 -10.98212 -10.87432 -10.59489 -10.36135 -8.79926 -8.57179 -6.36447 0.48847 0.60079 1.32446 1.37969 1.40342 1.48952 1.73678 2.07732 2.64774 2.84566 2.91349 3.30367 3.75271 3.82459 3.86911 3.96838 4.07122 4.21976 4.43078 4.51521 4.58198 4.68687 4.84226 4.91426 4.99664 5.06551 5.15581 5.21530 5.41838 5.43132 5.58987 6.17108 6.20817 6.46271 6.91257 7.67447 8.52061 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040160 B = 0.004395 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.050435 B = 6369.224772 C = 6746.094408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.037 3.963 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.562 4.562 8 H 0.085 0.915 9 S 0.128 5.872 10 C 0.125 3.875 11 N -0.339 5.339 12 N -0.306 5.306 13 C 0.193 3.807 14 C 0.200 3.800 15 H 0.102 0.898 16 C -0.139 4.139 17 C -0.113 4.113 18 C -0.155 4.155 19 C 0.053 3.947 20 O -0.399 6.399 21 N -0.313 5.313 22 N -0.569 5.569 23 H 0.282 0.718 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.375 0.625 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -19.704 -0.612 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.170 4.170 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.711 4.711 8 H 0.103 0.897 9 S 0.358 5.642 10 C -0.249 4.249 11 N -0.184 5.184 12 N -0.147 5.147 13 C -0.079 4.079 14 C 0.140 3.860 15 H 0.120 0.880 16 C -0.178 4.178 17 C -0.150 4.150 18 C -0.193 4.193 19 C -0.023 4.023 20 O -0.318 6.318 21 N -0.097 5.097 22 N -0.202 5.202 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.193 0.807 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.871 -19.340 -0.851 19.742 hybrid contribution -0.136 1.389 0.362 1.442 sum 3.735 -17.951 -0.489 18.342 Atomic orbital electron populations 1.69970 1.07047 1.29836 1.46864 1.25878 0.96080 1.02528 0.92551 0.85066 0.78109 0.75951 0.79365 1.19323 1.18733 1.19384 1.23261 0.96655 0.90929 1.60239 0.89699 1.82809 0.97605 0.95278 1.88494 1.28729 1.02350 0.87618 1.06222 1.74708 1.00155 1.20200 1.23339 1.73972 1.27017 0.94947 1.18723 1.24771 0.78781 0.98688 1.05626 1.19982 0.90964 0.83990 0.91050 0.88004 1.22123 1.01623 0.99140 0.94916 1.21598 0.99213 0.93742 1.00463 1.22215 0.98666 1.03377 0.94995 1.22929 0.99538 0.81542 0.98276 1.88006 1.53218 1.30894 1.59633 1.45021 1.05223 1.01954 1.57543 1.59888 1.00519 1.37059 1.22718 0.90838 0.90450 0.92695 0.89775 0.89612 0.92218 0.87865 0.87545 0.91023 0.80666 0.79786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.98 13.22 21.62 0.29 -49.70 16 2 C 0.04 2.00 5.49 84.82 0.47 2.47 16 3 Si 0.99 43.90 29.55 68.60 2.03 45.92 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.56 -32.39 9.37 67.92 0.64 -31.75 16 8 H 0.08 5.16 6.93 -2.91 -0.02 5.14 16 9 S 0.13 6.38 21.55 -56.49 -1.22 5.16 16 10 C 0.13 5.97 8.12 179.48 1.46 7.43 16 11 N -0.34 -18.06 11.04 -56.71 -0.63 -18.69 16 12 N -0.31 -14.76 12.18 -49.60 -0.60 -15.36 16 13 C 0.19 7.51 7.06 137.66 0.97 8.48 16 14 C 0.20 5.65 3.13 29.87 0.09 5.74 16 15 H 0.10 2.33 8.01 -2.39 -0.02 2.31 16 16 C -0.14 -3.34 5.40 30.68 0.17 -3.18 16 17 C -0.11 -1.74 6.03 30.72 0.19 -1.55 16 18 C -0.15 -2.31 6.14 30.68 0.19 -2.13 16 19 C 0.05 0.95 6.84 72.01 0.49 1.44 16 20 O -0.40 -11.70 10.39 -148.98 -1.55 -13.24 16 21 N -0.31 -11.79 3.80 -185.23 -0.70 -12.50 16 22 N -0.57 -14.78 10.27 37.02 0.38 -14.40 16 23 H 0.28 14.47 8.31 -92.71 -0.77 13.69 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.37 7.82 9.21 -210.56 -1.94 5.89 16 33 H 0.38 9.36 8.79 -210.55 -1.85 7.51 16 Total: -1.00 -73.47 297.30 0.02 -73.46 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -2.63 Total: 12.40 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 4.66 Total: -13.05 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -1.27 Total: -110.64 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.55 Total: -13.24 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -1.22 Total: 5.16 kcal Total: -73.47 0.02 -73.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743456523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.488 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds