Wall clock time and date at job start Mon Mar 30 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.53004 * 109.47132 * 240.00609 * 2 1 3 5 5 C 1.50693 * 109.47220 * 64.99613 * 4 2 1 6 6 O 1.21213 * 120.00493 * 0.02562 * 5 4 2 7 7 O 1.34310 * 119.99805 * 179.72718 * 5 4 2 8 8 C 1.34922 * 117.00349 * 180.27868 * 7 5 4 9 9 H 1.08003 * 119.99659 * 359.97438 * 8 7 5 10 10 C 1.38755 * 120.00272 * 179.97438 * 8 7 5 11 11 N 1.31441 * 120.00098 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99825 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47099 * 90.00418 * 12 10 8 14 14 H 1.48499 * 109.46984 * 210.00202 * 12 10 8 15 15 H 1.48500 * 109.47117 * 330.00078 * 12 10 8 16 16 C 1.50696 * 109.47267 * 119.99780 * 2 1 3 17 17 C 1.38238 * 119.97947 * 59.72647 * 16 2 1 18 18 C 1.38194 * 120.04364 * 179.76330 * 17 16 2 19 19 C 1.38491 * 120.02638 * 0.51405 * 18 17 16 20 20 F 1.35101 * 120.01314 * 179.76800 * 19 18 17 21 21 C 1.38397 * 119.97399 * 359.73936 * 19 18 17 22 22 C 1.38443 * 119.95499 * 0.02562 * 21 19 18 23 23 F 1.35095 * 120.01859 * 180.02562 * 22 21 19 24 24 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 25 25 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 26 26 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46515 * 304.99418 * 4 2 1 28 28 H 1.08994 * 109.46849 * 185.00037 * 4 2 1 29 29 H 0.96993 * 120.00374 * 179.97438 * 11 10 8 30 30 H 1.07991 * 119.97903 * 0.02562 * 17 16 2 31 31 H 1.08000 * 119.98700 * 180.25485 * 18 17 16 32 32 H 1.08003 * 120.02419 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0120 1.0870 -2.3633 7 8 1.9884 -0.3870 -3.6956 8 6 1.6051 0.3599 -4.7519 9 1 1.0446 1.2696 -4.5949 10 6 1.9310 -0.0408 -6.0397 11 7 2.6127 -1.1482 -6.2308 12 14 1.3996 0.9930 -7.5020 13 1 2.4546 1.9909 -7.8123 14 1 1.1887 0.1132 -8.6797 15 1 0.1329 1.6966 -7.1767 16 6 2.0324 -0.7103 1.2304 17 6 1.6935 -2.0321 1.4517 18 6 2.1575 -2.6863 2.5771 19 6 2.9537 -2.0150 3.4900 20 9 3.4033 -2.6534 4.5925 21 6 3.2892 -0.6901 3.2721 22 6 2.8279 -0.0371 2.1418 23 9 3.1551 1.2560 1.9276 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -1.7197 -1.2952 28 1 3.1263 -0.7993 -1.2057 29 1 2.8401 -1.4285 -7.1311 30 1 1.0693 -2.5552 0.7425 31 1 1.8955 -3.7202 2.7470 32 1 3.9105 -0.1660 3.9832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751860689.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:01 Heat of formation + Delta-G solvation = -176.157788 kcal Electronic energy + Delta-G solvation = -19903.456337 eV Core-core repulsion = 16271.330037 eV Total energy + Delta-G solvation = -3632.126300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.06585 -49.99423 -41.19988 -40.10063 -37.60446 -35.80092 -34.28154 -31.81677 -30.70962 -29.22520 -27.20911 -24.98210 -24.01982 -22.52608 -20.86753 -19.85243 -19.31604 -18.63864 -18.12736 -17.02045 -16.89962 -16.83611 -16.70780 -16.34452 -16.18129 -16.05988 -15.46977 -15.12764 -14.77749 -14.45108 -14.10644 -13.69859 -13.62117 -13.44728 -12.97322 -12.91479 -12.66682 -12.38307 -12.24565 -12.13179 -11.98967 -11.95959 -11.76747 -10.88702 -10.67547 -10.06814 -9.63429 -8.52452 -6.31902 -0.09499 0.01055 1.32453 1.35012 1.51877 1.67959 2.12000 2.33655 2.75892 2.86145 2.98950 3.38706 3.54620 3.63200 3.83252 3.96142 4.05066 4.20105 4.34500 4.64407 4.67008 4.77517 4.82056 4.87772 4.93213 4.99763 5.07928 5.09149 5.21681 5.35618 5.43110 5.76005 5.86146 6.72465 6.93380 7.80713 8.68383 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037207 B = 0.003794 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.362253 B = 7378.747027 C = 7617.721730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 H 0.067 0.933 4 C -0.086 4.086 5 C 0.396 3.604 6 O -0.574 6.574 7 O -0.248 6.248 8 C -0.420 4.420 9 H 0.081 0.919 10 C -0.004 4.004 11 N -0.904 5.904 12 Si 1.015 2.985 13 H -0.262 1.262 14 H -0.260 1.260 15 H -0.264 1.264 16 C -0.119 4.119 17 C -0.052 4.052 18 C -0.147 4.147 19 C 0.117 3.883 20 F -0.135 7.135 21 C -0.189 4.189 22 C 0.114 3.886 23 F -0.142 7.142 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.278 0.722 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -4.474 17.526 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.050 4.050 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.244 3.756 6 O -0.472 6.472 7 O -0.157 6.157 8 C -0.496 4.496 9 H 0.099 0.901 10 C -0.204 4.204 11 N -0.541 5.541 12 Si 0.834 3.166 13 H -0.187 1.187 14 H -0.184 1.184 15 H -0.188 1.188 16 C -0.120 4.120 17 C -0.070 4.070 18 C -0.165 4.165 19 C 0.098 3.902 20 F -0.114 7.114 21 C -0.209 4.209 22 C 0.094 3.906 23 F -0.121 7.121 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.141 0.859 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.735 -4.321 17.418 17.961 hybrid contribution 0.175 0.904 -0.524 1.059 sum -0.560 -3.417 16.894 17.245 Atomic orbital electron populations 1.21911 0.92730 1.03134 1.02330 1.19690 0.97588 0.98471 0.89246 0.91500 1.21310 1.03738 1.00028 0.87313 1.24387 0.79179 0.85595 0.86408 1.90505 1.41964 1.27115 1.87600 1.83901 1.67187 1.50235 1.14353 1.21398 1.37666 1.06962 0.83596 0.90125 1.26487 0.95545 0.97927 1.00445 1.70066 1.37052 1.23037 1.23979 0.84663 0.79056 0.77443 0.75454 1.18704 1.18390 1.18783 1.19919 0.99797 0.96081 0.96249 1.21060 0.97290 0.91767 0.96862 1.21491 0.98597 1.02641 0.93789 1.17410 0.97629 0.90200 0.85009 1.91525 1.87504 1.81471 1.50892 1.21093 1.05576 0.94977 0.99206 1.17358 0.98553 0.78979 0.95665 1.91496 1.90994 1.34838 1.94731 0.91661 0.93131 0.90397 0.85899 0.87889 0.91262 0.81533 0.81103 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.74 71.98 0.63 -3.46 16 2 C -0.03 -0.93 2.19 -11.54 -0.03 -0.96 16 3 H 0.07 2.34 6.94 -2.38 -0.02 2.32 16 4 C -0.09 -2.92 5.03 29.85 0.15 -2.77 16 5 C 0.40 19.32 7.62 71.23 0.54 19.86 16 6 O -0.57 -30.43 13.20 20.77 0.27 -30.16 16 7 O -0.25 -14.47 9.75 14.85 0.14 -14.33 16 8 C -0.42 -25.49 9.65 67.94 0.66 -24.84 16 9 H 0.08 4.96 6.86 -2.91 -0.02 4.94 16 10 C 0.00 -0.23 5.49 84.87 0.47 0.24 16 11 N -0.90 -53.32 13.67 21.62 0.30 -53.02 16 12 Si 1.01 43.49 29.55 68.60 2.03 45.51 16 13 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 14 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 15 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 16 C -0.12 -2.80 4.79 -19.82 -0.09 -2.89 16 17 C -0.05 -0.90 8.76 22.26 0.19 -0.71 16 18 C -0.15 -2.22 10.03 22.32 0.22 -2.00 16 19 C 0.12 2.11 7.30 22.37 0.16 2.28 16 20 F -0.14 -2.52 17.27 44.97 0.78 -1.74 16 21 C -0.19 -3.74 10.01 22.36 0.22 -3.52 16 22 C 0.11 2.74 7.24 22.37 0.16 2.90 16 23 F -0.14 -4.00 16.19 44.97 0.73 -3.27 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.83 5.95 -2.39 -0.01 1.81 16 26 H 0.08 1.76 7.37 -2.39 -0.02 1.75 16 27 H 0.12 3.43 7.58 -2.38 -0.02 3.41 16 28 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.17 2.20 7.16 -2.92 -0.02 2.18 16 31 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -71.88 290.36 8.70 -63.19 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.16 Total: 9.67 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 3.29 Total: -15.86 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.30 Total: -53.02 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: 0.42 Total: -44.48 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 1.50 Total: -5.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.88 8.70 -63.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751860689.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.969 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds