Wall clock time and date at job start Mon Mar 30 2020 01:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21208 * 119.99902 * 0.02562 * 5 4 2 7 7 O 1.34308 * 119.99862 * 179.97438 * 5 4 2 8 8 C 1.34922 * 117.00061 * 179.97438 * 7 5 4 9 9 H 1.07999 * 119.99785 * 0.02562 * 8 7 5 10 10 C 1.38752 * 120.00163 * 180.02562 * 8 7 5 11 11 N 1.31438 * 119.99951 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99948 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47174 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47031 * 120.00125 * 12 10 8 15 15 H 1.48505 * 109.46858 * 239.99908 * 12 10 8 16 16 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 17 17 C 1.38230 * 119.98418 * 299.98806 * 16 2 1 18 18 C 1.38193 * 120.04831 * 180.02562 * 17 16 2 19 19 C 1.38491 * 120.02385 * 359.97438 * 18 17 16 20 20 F 1.35106 * 120.00820 * 179.97438 * 19 18 17 21 21 C 1.38390 * 119.97880 * 359.97438 * 19 18 17 22 22 C 1.38444 * 119.94780 * 359.76450 * 21 19 18 23 23 F 1.35102 * 120.01403 * 180.22816 * 22 21 19 24 24 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 25 25 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 28 28 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 29 29 H 0.97000 * 119.99981 * 180.02562 * 11 10 8 30 30 H 1.07999 * 119.97755 * 359.97438 * 17 16 2 31 31 H 1.07998 * 119.98440 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.02851 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0113 1.0864 2.3633 7 8 1.9833 -0.3902 3.6959 8 6 1.5958 0.3541 4.7524 9 1 1.0361 1.2643 4.5954 10 6 1.9162 -0.0499 6.0406 11 7 2.5977 -1.1574 6.2316 12 14 1.3790 0.9803 7.5033 13 1 0.6303 2.1695 7.0230 14 1 0.5035 0.1681 8.3860 15 1 2.5756 1.4220 8.2638 16 6 2.0323 -0.7103 -1.2305 17 6 1.6984 -2.0338 -1.4489 18 6 2.1587 -2.6866 -2.5766 19 6 2.9548 -2.0151 -3.4895 20 9 3.4051 -2.6538 -4.5916 21 6 3.2889 -0.6898 -3.2724 22 6 2.8227 -0.0353 -2.1451 23 9 3.1443 1.2599 -1.9342 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1264 -0.7993 1.2056 28 1 1.6054 -1.7197 1.2951 29 1 2.8214 -1.4400 7.1322 30 1 1.0779 -2.5583 -0.7373 31 1 1.8968 -3.7205 -2.7464 32 1 3.9100 -0.1656 -3.9836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751860694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:04 Heat of formation + Delta-G solvation = -158.245824 kcal Electronic energy + Delta-G solvation = -19902.654221 eV Core-core repulsion = 16271.304642 eV Total energy + Delta-G solvation = -3631.349579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.17430 -49.06232 -39.63022 -38.78319 -35.86624 -34.30317 -32.13970 -30.98400 -29.59591 -27.84068 -25.19757 -23.95554 -23.07508 -21.07613 -19.40341 -18.40325 -17.72630 -17.42245 -16.63237 -16.10770 -15.93669 -15.44118 -15.39701 -15.03021 -14.64086 -14.46118 -14.35084 -13.98889 -13.46500 -13.08948 -12.81714 -12.49400 -12.07540 -11.99871 -11.80363 -11.52000 -11.26123 -10.98348 -10.94692 -10.60846 -10.40026 -10.26826 -9.78869 -9.23983 -8.95594 -8.71330 -8.57513 -6.40829 -4.08629 0.78613 0.83503 3.09952 3.17499 3.20119 3.26960 3.53695 3.70230 3.92907 4.26353 4.35157 4.41604 4.65382 4.85248 4.97271 5.10862 5.18443 5.32296 5.53017 5.60741 5.72901 5.80977 5.85003 5.92668 5.98076 6.10082 6.16085 6.48719 6.58514 6.66383 6.82776 7.41019 7.96359 8.73012 9.08439 9.86791 10.77367 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037227 B = 0.003794 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.970397 B = 7378.379778 C = 7621.552432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 H 0.094 0.906 4 C -0.096 4.096 5 C 0.399 3.601 6 O -0.553 6.553 7 O -0.216 6.216 8 C -0.382 4.382 9 H 0.096 0.904 10 C 0.041 3.959 11 N -0.866 5.866 12 Si 0.941 3.059 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.111 4.111 17 C -0.056 4.056 18 C -0.160 4.160 19 C 0.119 3.881 20 F -0.135 7.135 21 C -0.191 4.191 22 C 0.133 3.867 23 F -0.127 7.127 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.268 0.732 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -3.168 -16.835 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 H 0.112 0.888 4 C -0.134 4.134 5 C 0.245 3.755 6 O -0.451 6.451 7 O -0.123 6.123 8 C -0.458 4.458 9 H 0.114 0.886 10 C -0.162 4.162 11 N -0.503 5.503 12 Si 0.766 3.234 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.112 4.112 17 C -0.074 4.074 18 C -0.179 4.179 19 C 0.099 3.901 20 F -0.114 7.114 21 C -0.211 4.211 22 C 0.113 3.887 23 F -0.105 7.105 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.415 -3.006 -16.699 16.973 hybrid contribution 0.071 0.520 0.475 0.708 sum -0.344 -2.485 -16.224 16.417 Atomic orbital electron populations 1.21974 0.93091 1.01814 1.03577 1.19875 0.97290 0.99747 0.88876 0.88815 1.21147 1.02834 0.99471 0.89938 1.23055 0.80873 0.85601 0.85944 1.90521 1.41300 1.25940 1.87292 1.83878 1.65958 1.49423 1.13058 1.21273 1.35875 1.06505 0.82142 0.88620 1.25329 0.96228 0.96718 0.97963 1.69999 1.36352 1.21498 1.22483 0.85636 0.78512 0.79351 0.79889 1.18955 1.20195 1.20194 1.20149 0.98738 0.95093 0.97195 1.20849 0.97507 0.92876 0.96213 1.21202 1.00215 1.01535 0.94975 1.17277 0.97591 0.90336 0.84867 1.91519 1.87457 1.81557 1.50860 1.20980 1.05786 0.94600 0.99732 1.17169 0.97581 0.79227 0.94699 1.91537 1.90833 1.33543 1.94587 0.93071 0.93008 0.89335 0.89030 0.88891 0.92166 0.83594 0.84018 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.75 37.16 0.33 -1.83 16 2 C -0.04 -0.60 2.19 -91.77 -0.20 -0.80 16 3 H 0.09 1.59 6.94 -51.92 -0.36 1.23 16 4 C -0.10 -1.65 5.03 -27.88 -0.14 -1.79 16 5 C 0.40 9.47 7.62 36.01 0.27 9.75 16 6 O -0.55 -14.11 13.20 -19.05 -0.25 -14.36 16 7 O -0.22 -6.11 9.75 -20.70 -0.20 -6.31 16 8 C -0.38 -11.22 9.65 30.92 0.30 -10.92 16 9 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 10 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 11 N -0.87 -25.32 13.67 55.48 0.76 -24.56 16 12 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 C -0.11 -1.39 4.79 -104.55 -0.50 -1.89 16 17 C -0.06 -0.59 8.76 -39.60 -0.35 -0.93 16 18 C -0.16 -1.52 10.03 -39.50 -0.40 -1.92 16 19 C 0.12 1.24 7.30 -39.43 -0.29 0.96 16 20 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 21 C -0.19 -2.07 10.01 -39.45 -0.39 -2.46 16 22 C 0.13 1.66 7.25 -39.43 -0.29 1.38 16 23 F -0.13 -1.76 16.19 2.25 0.04 -1.73 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.65 7.39 -51.92 -0.38 0.26 16 26 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.40 7.57 -51.93 -0.39 1.01 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.15 1.29 7.16 -52.49 -0.38 0.91 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -32.13 290.36 -5.03 -37.15 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.01 Total: 0.03 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.75 Total: -9.39 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.76 Total: -24.56 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.45 Total: -20.67 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.13 -5.03 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751860694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.091 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds