Wall clock time and date at job start Mon Mar 30 2020 01:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21208 * 119.99902 * 0.02562 * 5 4 2 7 7 O 1.34308 * 119.99862 * 179.97438 * 5 4 2 8 8 C 1.34922 * 117.00061 * 179.97438 * 7 5 4 9 9 H 1.07999 * 119.99785 * 0.02562 * 8 7 5 10 10 C 1.38752 * 120.00163 * 180.02562 * 8 7 5 11 11 N 1.31438 * 119.99951 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99948 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47174 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47031 * 120.00125 * 12 10 8 15 15 H 1.48505 * 109.46858 * 239.99908 * 12 10 8 16 16 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 17 17 C 1.38230 * 119.98418 * 299.98806 * 16 2 1 18 18 C 1.38193 * 120.04831 * 180.02562 * 17 16 2 19 19 C 1.38491 * 120.02385 * 359.97438 * 18 17 16 20 20 F 1.35106 * 120.00820 * 179.97438 * 19 18 17 21 21 C 1.38390 * 119.97880 * 359.97438 * 19 18 17 22 22 C 1.38444 * 119.94780 * 359.76450 * 21 19 18 23 23 F 1.35102 * 120.01403 * 180.22816 * 22 21 19 24 24 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 25 25 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 27 27 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 28 28 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 29 29 H 0.97000 * 119.99981 * 180.02562 * 11 10 8 30 30 H 1.07999 * 119.97755 * 359.97438 * 17 16 2 31 31 H 1.07998 * 119.98440 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.02851 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0113 1.0864 2.3633 7 8 1.9833 -0.3902 3.6959 8 6 1.5958 0.3541 4.7524 9 1 1.0361 1.2643 4.5954 10 6 1.9162 -0.0499 6.0406 11 7 2.5977 -1.1574 6.2316 12 14 1.3790 0.9803 7.5033 13 1 0.6303 2.1695 7.0230 14 1 0.5035 0.1681 8.3860 15 1 2.5756 1.4220 8.2638 16 6 2.0323 -0.7103 -1.2305 17 6 1.6984 -2.0338 -1.4489 18 6 2.1587 -2.6866 -2.5766 19 6 2.9548 -2.0151 -3.4895 20 9 3.4051 -2.6538 -4.5916 21 6 3.2889 -0.6898 -3.2724 22 6 2.8227 -0.0353 -2.1451 23 9 3.1443 1.2599 -1.9342 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1264 -0.7993 1.2056 28 1 1.6054 -1.7197 1.2951 29 1 2.8214 -1.4400 7.1322 30 1 1.0779 -2.5583 -0.7373 31 1 1.8968 -3.7205 -2.7464 32 1 3.9100 -0.1656 -3.9836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751860694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:03 Heat of formation + Delta-G solvation = -176.211117 kcal Electronic energy + Delta-G solvation = -19903.433254 eV Core-core repulsion = 16271.304642 eV Total energy + Delta-G solvation = -3632.128612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.06410 -49.99312 -41.20130 -40.10135 -37.60578 -35.80188 -34.28212 -31.81687 -30.70952 -29.22597 -27.21087 -24.98064 -24.02153 -22.52712 -20.86752 -19.85326 -19.31612 -18.63999 -18.12705 -17.01983 -16.89987 -16.83751 -16.70942 -16.34391 -16.17529 -16.06056 -15.46993 -15.12842 -14.77649 -14.45506 -14.10950 -13.69999 -13.62183 -13.44662 -12.97625 -12.91457 -12.66774 -12.38454 -12.25415 -12.12532 -11.99254 -11.94837 -11.76687 -10.88819 -10.67585 -10.06850 -9.63438 -8.52650 -6.31984 -0.09502 0.01047 1.31418 1.35137 1.53155 1.67683 2.11990 2.33649 2.75805 2.86122 2.98761 3.38676 3.54605 3.63156 3.83222 3.96139 4.05082 4.20073 4.34478 4.64471 4.66972 4.77447 4.82012 4.87716 4.93184 4.99731 5.07967 5.09147 5.21892 5.35625 5.43034 5.75980 5.86218 6.72515 6.93382 7.80713 8.68400 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037227 B = 0.003794 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.970397 B = 7378.379778 C = 7621.552432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 H 0.067 0.933 4 C -0.086 4.086 5 C 0.396 3.604 6 O -0.574 6.574 7 O -0.248 6.248 8 C -0.420 4.420 9 H 0.081 0.919 10 C -0.004 4.004 11 N -0.904 5.904 12 Si 1.015 2.985 13 H -0.266 1.266 14 H -0.259 1.259 15 H -0.262 1.262 16 C -0.119 4.119 17 C -0.052 4.052 18 C -0.147 4.147 19 C 0.117 3.883 20 F -0.135 7.135 21 C -0.189 4.189 22 C 0.114 3.886 23 F -0.142 7.142 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.278 0.722 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -4.476 -17.523 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.050 4.050 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.244 3.756 6 O -0.472 6.472 7 O -0.157 6.157 8 C -0.495 4.495 9 H 0.099 0.901 10 C -0.204 4.204 11 N -0.541 5.541 12 Si 0.834 3.166 13 H -0.190 1.190 14 H -0.184 1.184 15 H -0.186 1.186 16 C -0.120 4.120 17 C -0.070 4.070 18 C -0.165 4.165 19 C 0.097 3.903 20 F -0.114 7.114 21 C -0.208 4.208 22 C 0.094 3.906 23 F -0.121 7.121 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.087 0.913 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.702 -4.319 -17.417 17.958 hybrid contribution 0.169 0.899 0.525 1.054 sum -0.533 -3.420 -16.892 17.243 Atomic orbital electron populations 1.21913 0.92739 1.03130 1.02325 1.19688 0.97581 0.98475 0.89250 0.91497 1.21312 1.03753 1.00017 0.87307 1.24388 0.79185 0.85571 0.86414 1.90504 1.41892 1.27174 1.87612 1.83902 1.67255 1.50217 1.14319 1.21432 1.37588 1.06969 0.83553 0.90146 1.26487 0.95568 0.97918 1.00449 1.70074 1.37147 1.23015 1.23899 0.84604 0.78725 0.77545 0.75715 1.18971 1.18358 1.18608 1.19918 0.99884 0.96036 0.96202 1.21059 0.97284 0.91779 0.96868 1.21490 0.98621 1.02655 0.93748 1.17410 0.97611 0.90205 0.85025 1.91527 1.87478 1.81464 1.50927 1.21092 1.05528 0.94944 0.99281 1.17360 0.98598 0.78897 0.95700 1.91498 1.91123 1.34654 1.94784 0.91674 0.90402 0.93125 0.87873 0.85897 0.91270 0.81537 0.81104 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.75 71.98 0.63 -3.46 16 2 C -0.03 -0.93 2.19 -11.54 -0.03 -0.96 16 3 H 0.07 2.34 6.94 -2.38 -0.02 2.32 16 4 C -0.09 -2.92 5.03 29.85 0.15 -2.77 16 5 C 0.40 19.32 7.62 71.24 0.54 19.86 16 6 O -0.57 -30.45 13.20 20.78 0.27 -30.18 16 7 O -0.25 -14.48 9.75 14.88 0.14 -14.33 16 8 C -0.42 -25.45 9.65 67.94 0.66 -24.79 16 9 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 10 C 0.00 -0.24 5.49 84.87 0.47 0.23 16 11 N -0.90 -53.28 13.67 21.62 0.30 -52.98 16 12 Si 1.01 43.49 29.55 68.60 2.03 45.52 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 15 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 16 C -0.12 -2.79 4.79 -19.82 -0.09 -2.89 16 17 C -0.05 -0.91 8.76 22.26 0.19 -0.71 16 18 C -0.15 -2.22 10.03 22.32 0.22 -2.00 16 19 C 0.12 2.11 7.30 22.37 0.16 2.27 16 20 F -0.14 -2.52 17.27 44.97 0.78 -1.74 16 21 C -0.19 -3.74 10.01 22.36 0.22 -3.51 16 22 C 0.11 2.74 7.25 22.37 0.16 2.90 16 23 F -0.14 -4.00 16.19 44.97 0.73 -3.27 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 1.76 7.39 -2.38 -0.02 1.75 16 26 H 0.05 1.83 5.95 -2.39 -0.01 1.82 16 27 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.12 3.43 7.57 -2.39 -0.02 3.41 16 29 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.17 2.20 7.16 -2.91 -0.02 2.18 16 31 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -71.93 290.36 8.70 -63.24 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.16 Total: 9.55 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 3.29 Total: -15.82 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.30 Total: -52.98 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: 0.42 Total: -44.51 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 1.50 Total: -5.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -71.93 8.70 -63.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751860694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.975 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds