Wall clock time and date at job start Mon Mar 30 2020 00:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00251 * 2 1 4 4 H 1.48506 * 109.47040 * 239.99981 * 3 2 1 5 5 H 1.48503 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47259 * 119.99683 * 3 2 1 7 7 C 1.37882 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47152 * 179.97438 * 9 7 2 11 11 O 1.45192 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00018 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00015 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00046 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 12 11 16 16 C 1.38231 * 119.98647 * 264.72539 * 15 14 12 17 17 C 1.38190 * 120.04997 * 179.72798 * 16 15 14 18 18 C 1.38498 * 120.02135 * 0.54348 * 17 16 15 19 19 F 1.35104 * 120.00701 * 179.75040 * 18 17 16 20 20 C 1.38398 * 119.97658 * 359.73031 * 18 17 16 21 21 C 1.38438 * 119.95003 * 359.97438 * 20 18 17 22 22 F 1.35092 * 120.01362 * 179.97438 * 21 20 18 23 23 H 0.97000 * 119.99888 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46703 * 60.00212 * 9 7 2 25 25 H 1.08998 * 109.47061 * 300.00592 * 9 7 2 26 26 H 1.09001 * 109.46829 * 59.99813 * 10 9 7 27 27 H 1.08998 * 109.47230 * 300.00549 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99765 * 14 12 11 29 29 H 1.09001 * 109.47380 * 59.99853 * 14 12 11 30 30 H 1.08004 * 119.97483 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.98926 * 180.25500 * 17 16 15 32 32 H 1.07997 * 120.02198 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0015 11 8 1.5192 -4.9196 0.0020 12 6 2.2502 -6.0453 0.0024 13 8 3.4568 -5.9821 0.0018 14 6 1.5660 -7.3881 0.0023 15 6 2.6039 -8.4807 0.0022 16 6 2.9998 -9.0574 -1.1901 17 6 3.9555 -10.0555 -1.1923 18 6 4.5095 -10.4870 0.0014 19 9 5.4402 -11.4664 -0.0006 20 6 4.1098 -9.9143 1.1963 21 6 3.1567 -8.9102 1.1967 22 9 2.7652 -8.3506 2.3623 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8725 -3.6040 0.8909 27 1 2.8712 -3.6048 -0.8890 28 1 0.9429 -7.4784 0.8921 29 1 0.9435 -7.4787 -0.8878 30 1 2.5648 -8.7248 -2.1210 31 1 4.2671 -10.5025 -2.1248 32 1 4.5416 -10.2499 2.1275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756624749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:05 Heat of formation + Delta-G solvation = -166.275972 kcal Electronic energy + Delta-G solvation = -19404.004045 eV Core-core repulsion = 15772.306253 eV Total energy + Delta-G solvation = -3631.697792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.28562 -49.21517 -40.21014 -38.96905 -36.16252 -33.39546 -33.02064 -31.11818 -30.33242 -27.90369 -24.99204 -23.53271 -22.69535 -21.09827 -20.42423 -18.48505 -17.56770 -17.50526 -16.42587 -16.30379 -16.09778 -16.03612 -15.84717 -15.52550 -15.17703 -14.68777 -14.50632 -14.18415 -13.70397 -13.06349 -12.79839 -12.39698 -12.28424 -12.17179 -12.01277 -11.65795 -11.22991 -11.07866 -10.75421 -10.72133 -10.29886 -9.67169 -9.66650 -9.37189 -9.32508 -8.91715 -8.45491 -6.11771 -4.16322 0.59912 0.72277 2.50899 2.86546 3.29361 3.31963 3.33806 3.40672 3.57993 4.09229 4.21895 4.25874 4.38278 4.52731 4.77790 5.12284 5.17857 5.24750 5.27560 5.48652 5.51560 5.64172 5.71624 5.88910 6.06553 6.07558 6.44556 6.61406 6.95393 7.53636 7.60280 7.84796 8.14544 8.23558 8.88992 9.48130 10.99701 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042222 B = 0.003118 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.995946 B = 8978.047056 C = 9047.116286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.356 6.356 12 C 0.456 3.544 13 O -0.512 6.512 14 C -0.077 4.077 15 C -0.115 4.115 16 C -0.046 4.046 17 C -0.163 4.163 18 C 0.129 3.871 19 F -0.133 7.133 20 C -0.192 4.192 21 C 0.148 3.852 22 F -0.125 7.125 23 H 0.264 0.736 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -21.947 -1.163 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.272 6.272 12 C 0.299 3.701 13 O -0.401 6.401 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.064 4.064 17 C -0.181 4.181 18 C 0.110 3.890 19 F -0.111 7.111 20 C -0.211 4.211 21 C 0.129 3.871 22 F -0.104 7.104 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.260 -21.761 -1.111 22.202 hybrid contribution 0.743 0.923 0.286 1.219 sum 5.002 -20.838 -0.826 21.446 Atomic orbital electron populations 1.69962 1.06096 1.27133 1.49662 1.24982 0.94923 0.99388 0.94822 0.86523 0.79485 0.82438 0.78805 1.20055 1.21102 1.20047 1.20947 0.93154 0.90140 1.52380 0.92310 1.19168 0.94174 0.88989 0.98889 1.23663 0.96391 0.78655 1.00986 1.86514 1.42360 1.15760 1.82543 1.23238 0.86586 0.87093 0.73208 1.90654 1.15679 1.88269 1.45455 1.20208 0.96798 0.86958 1.07488 1.19470 1.00557 0.99155 0.92446 1.20798 0.94709 0.93574 0.97359 1.21165 0.99396 1.00113 0.97475 1.17300 0.89531 0.88378 0.93806 1.91532 1.62842 1.59403 1.97337 1.20981 1.01142 0.99776 0.99236 1.17098 0.95281 0.93345 0.81392 1.91548 1.89255 1.83671 1.45902 0.92627 0.95336 0.95323 0.92289 0.92275 0.86378 0.85994 0.83609 0.83804 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.68 5.40 37.16 0.20 1.88 16 11 O -0.36 -6.95 10.22 -39.26 -0.40 -7.35 16 12 C 0.46 7.67 7.95 36.01 0.29 7.95 16 13 O -0.51 -10.00 15.78 -18.75 -0.30 -10.29 16 14 C -0.08 -0.87 5.72 -29.03 -0.17 -1.04 16 15 C -0.12 -1.28 4.38 -104.54 -0.46 -1.74 16 16 C -0.05 -0.42 9.67 -39.60 -0.38 -0.80 16 17 C -0.16 -1.40 10.03 -39.50 -0.40 -1.80 16 18 C 0.13 1.28 7.30 -39.43 -0.29 0.99 16 19 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 20 C -0.19 -1.99 10.01 -39.45 -0.39 -2.38 16 21 C 0.15 1.76 7.24 -39.43 -0.29 1.47 16 22 F -0.13 -1.64 16.57 2.25 0.04 -1.60 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.12 1.18 7.79 -51.93 -0.40 0.78 16 29 H 0.12 1.00 8.05 -51.93 -0.42 0.58 16 30 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 300.22 15.07 4.52 4.52 Total: -1.00 -32.01 300.22 -6.15 -38.15 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -3.32 Total: -4.42 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.44 Total: -8.50 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.70 Total: -17.64 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.01 -6.15 -38.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756624749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.122 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds