Wall clock time and date at job start Mon Mar 30 2020 00:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00251 * 2 1 4 4 H 1.48506 * 109.47040 * 239.99981 * 3 2 1 5 5 H 1.48503 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47259 * 119.99683 * 3 2 1 7 7 C 1.37882 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47152 * 179.97438 * 9 7 2 11 11 O 1.45192 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00018 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00015 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00046 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 12 11 16 16 C 1.38231 * 119.98647 * 264.72539 * 15 14 12 17 17 C 1.38190 * 120.04997 * 179.72798 * 16 15 14 18 18 C 1.38498 * 120.02135 * 0.54348 * 17 16 15 19 19 F 1.35104 * 120.00701 * 179.75040 * 18 17 16 20 20 C 1.38398 * 119.97658 * 359.73031 * 18 17 16 21 21 C 1.38438 * 119.95003 * 359.97438 * 20 18 17 22 22 F 1.35092 * 120.01362 * 179.97438 * 21 20 18 23 23 H 0.97000 * 119.99888 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46703 * 60.00212 * 9 7 2 25 25 H 1.08998 * 109.47061 * 300.00592 * 9 7 2 26 26 H 1.09001 * 109.46829 * 59.99813 * 10 9 7 27 27 H 1.08998 * 109.47230 * 300.00549 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99765 * 14 12 11 29 29 H 1.09001 * 109.47380 * 59.99853 * 14 12 11 30 30 H 1.08004 * 119.97483 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.98926 * 180.25500 * 17 16 15 32 32 H 1.07997 * 120.02198 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0015 11 8 1.5192 -4.9196 0.0020 12 6 2.2502 -6.0453 0.0024 13 8 3.4568 -5.9821 0.0018 14 6 1.5660 -7.3881 0.0023 15 6 2.6039 -8.4807 0.0022 16 6 2.9998 -9.0574 -1.1901 17 6 3.9555 -10.0555 -1.1923 18 6 4.5095 -10.4870 0.0014 19 9 5.4402 -11.4664 -0.0006 20 6 4.1098 -9.9143 1.1963 21 6 3.1567 -8.9102 1.1967 22 9 2.7652 -8.3506 2.3623 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8725 -3.6040 0.8909 27 1 2.8712 -3.6048 -0.8890 28 1 0.9429 -7.4784 0.8921 29 1 0.9435 -7.4787 -0.8878 30 1 2.5648 -8.7248 -2.1210 31 1 4.2671 -10.5025 -2.1248 32 1 4.5416 -10.2499 2.1275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756624749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:05 Heat of formation + Delta-G solvation = -183.597098 kcal Electronic energy + Delta-G solvation = -19404.755145 eV Core-core repulsion = 15772.306253 eV Total energy + Delta-G solvation = -3632.448893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.13296 -50.05174 -41.55258 -39.86285 -37.69096 -35.45339 -33.97721 -32.31516 -31.84333 -28.92901 -26.91519 -24.29394 -23.82659 -22.84541 -21.74490 -19.29582 -19.04403 -18.41344 -18.18005 -17.55700 -17.50204 -16.98957 -16.82361 -16.50018 -16.40357 -16.17214 -15.51943 -15.25260 -14.84713 -14.38503 -14.36340 -14.03318 -13.32090 -13.10526 -13.02626 -12.96119 -12.82735 -12.58098 -12.55897 -12.38744 -11.89050 -11.54540 -11.47821 -11.37315 -10.61118 -10.11918 -9.73206 -8.27445 -6.40784 -0.20191 -0.02225 1.17585 1.40896 1.44444 1.52226 1.73644 2.34626 2.44268 2.80401 3.06913 3.27706 3.41338 3.53235 3.83089 3.86481 4.05387 4.21307 4.26040 4.36378 4.47858 4.68980 4.73869 4.80003 4.87735 5.00406 5.14433 5.26668 5.46572 5.54851 5.70606 5.74684 6.06189 6.70229 6.74755 7.29018 8.84914 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042222 B = 0.003118 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.995946 B = 8978.047056 C = 9047.116286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.363 6.363 12 C 0.454 3.546 13 O -0.541 6.541 14 C -0.067 4.067 15 C -0.129 4.129 16 C -0.043 4.043 17 C -0.154 4.154 18 C 0.121 3.879 19 F -0.135 7.135 20 C -0.198 4.198 21 C 0.123 3.877 22 F -0.140 7.140 23 H 0.268 0.732 24 H 0.009 0.991 25 H 0.006 0.994 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.161 0.839 30 H 0.176 0.824 31 H 0.172 0.828 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.652 -22.541 -2.246 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.280 6.280 12 C 0.299 3.701 13 O -0.431 6.431 14 C -0.104 4.104 15 C -0.130 4.130 16 C -0.060 4.060 17 C -0.173 4.173 18 C 0.102 3.898 19 F -0.113 7.113 20 C -0.218 4.218 21 C 0.104 3.896 22 F -0.119 7.119 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.178 0.822 30 H 0.193 0.807 31 H 0.190 0.810 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.871 -22.384 -2.193 23.013 hybrid contribution 0.562 0.984 0.610 1.287 sum 5.433 -21.400 -1.583 22.136 Atomic orbital electron populations 1.70082 1.07780 1.28377 1.50269 1.25952 0.95844 1.03365 0.94033 0.85388 0.78215 0.77488 0.79299 1.18979 1.20405 1.19194 1.21360 0.93681 0.91360 1.52694 0.91809 1.18975 0.94329 0.90537 0.96775 1.23135 0.95028 0.79213 1.00835 1.86506 1.42558 1.15773 1.83156 1.24340 0.86493 0.87690 0.71617 1.90639 1.17122 1.88543 1.46779 1.20363 0.96916 0.83205 1.09931 1.19616 1.01007 0.99452 0.92961 1.21175 0.94226 0.92960 0.97676 1.21517 0.98363 0.99367 0.98051 1.17478 0.89663 0.88436 0.94224 1.91528 1.62962 1.59497 1.97362 1.21117 1.00916 0.99577 1.00142 1.17392 0.96443 0.94374 0.81381 1.91505 1.89546 1.84055 1.46753 0.92284 0.97214 0.97599 0.92707 0.92041 0.85092 0.82179 0.80665 0.81006 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.66 5.35 29.85 0.16 1.82 16 10 C 0.09 4.09 5.40 71.98 0.39 4.48 16 11 O -0.36 -14.12 10.22 -51.41 -0.53 -14.64 16 12 C 0.45 14.82 7.95 71.24 0.57 15.38 16 13 O -0.54 -20.83 15.78 21.97 0.35 -20.49 16 14 C -0.07 -1.38 5.72 29.10 0.17 -1.21 16 15 C -0.13 -2.63 4.38 -19.81 -0.09 -2.72 16 16 C -0.04 -0.64 9.67 22.26 0.22 -0.43 16 17 C -0.15 -2.22 10.03 22.32 0.22 -2.00 16 18 C 0.12 2.20 7.30 22.37 0.16 2.36 16 19 F -0.13 -2.52 17.27 44.97 0.78 -1.75 16 20 C -0.20 -3.96 10.01 22.36 0.22 -3.74 16 21 C 0.12 2.84 7.24 22.37 0.16 3.00 16 22 F -0.14 -3.68 16.57 44.97 0.74 -2.94 16 23 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 24 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 27 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 28 H 0.13 2.39 7.79 -2.39 -0.02 2.37 16 29 H 0.16 2.04 8.05 -2.39 -0.02 2.02 16 30 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -69.59 300.22 7.67 -61.91 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.14 Total: 0.72 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 2.88 Total: -13.36 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.28 Total: -54.99 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.18 Total: -35.13 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 1.52 Total: -4.69 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.59 7.67 -61.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756624749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.684 kcal (2) G-P(sol) polarization free energy of solvation -69.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds