Wall clock time and date at job start Mon Mar 30 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99918 * 2 1 4 4 H 1.48506 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47252 * 299.99926 * 3 2 1 6 6 H 1.48497 * 109.47475 * 60.00052 * 3 2 1 7 7 C 1.37882 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46714 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46711 * 180.02562 * 10 9 7 12 12 C 1.34235 * 116.99554 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00312 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99791 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47139 * 180.02562 * 14 12 11 16 16 C 1.38425 * 120.02136 * 90.00372 * 15 14 12 17 17 F 1.35101 * 120.01402 * 359.70506 * 16 15 14 18 18 C 1.38476 * 119.97328 * 179.97438 * 16 15 14 19 19 C 1.38207 * 120.02410 * 0.02562 * 18 16 15 20 20 C 1.38207 * 120.05360 * 359.97438 * 19 18 16 21 21 C 1.38412 * 120.02814 * 269.98005 * 15 14 12 22 22 F 1.35096 * 120.01191 * 0.02562 * 21 15 14 23 23 H 0.96999 * 120.00332 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47455 * 60.00008 * 9 7 2 25 25 H 1.09000 * 109.47444 * 299.99556 * 9 7 2 26 26 H 1.08996 * 109.47282 * 59.99744 * 10 9 7 27 27 H 1.09003 * 109.47130 * 299.99264 * 10 9 7 28 28 H 1.09008 * 109.46849 * 60.00775 * 14 12 11 29 29 H 1.09006 * 109.47704 * 300.00617 * 14 12 11 30 30 H 1.08001 * 119.98752 * 179.97438 * 18 16 15 31 31 H 1.08000 * 119.97200 * 180.02562 * 19 18 16 32 32 H 1.07995 * 119.99247 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 8 1.5193 -4.9195 0.0012 12 6 2.2504 -6.0453 0.0017 13 8 3.4570 -5.9821 0.0030 14 6 1.5662 -7.3880 0.0017 15 6 2.6042 -8.4806 0.0029 16 6 3.0802 -8.9824 1.2019 17 9 2.6189 -8.4886 2.3718 18 6 4.0335 -9.9867 1.2019 19 6 4.5100 -10.4878 0.0052 20 6 4.0355 -9.9876 -1.1926 21 6 3.0818 -8.9836 -1.1949 22 9 2.6181 -8.4948 -2.3659 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6048 -0.8878 28 1 0.9439 -7.4787 -0.8887 29 1 0.9430 -7.4784 0.8914 30 1 4.4054 -10.3781 2.1373 31 1 5.2533 -11.2714 0.0062 32 1 4.4089 -10.3796 -2.1271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756628295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:45 Heat of formation + Delta-G solvation = -164.808767 kcal Electronic energy + Delta-G solvation = -19713.158961 eV Core-core repulsion = 16081.524792 eV Total energy + Delta-G solvation = -3631.634169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.22149 -49.21850 -40.11284 -38.94076 -36.16784 -33.42912 -33.22973 -30.57360 -30.34735 -28.22823 -25.01175 -23.15667 -22.88129 -21.08481 -20.40547 -18.39574 -17.64807 -17.53128 -16.46298 -16.31070 -15.99911 -15.93868 -15.80090 -15.47241 -15.40081 -14.65150 -14.47893 -13.88155 -13.64859 -13.03125 -12.72750 -12.53175 -12.36708 -12.20557 -11.88377 -11.66080 -11.22127 -11.03863 -10.76680 -10.68719 -10.28205 -9.66253 -9.65043 -9.30467 -9.16609 -9.01853 -8.44386 -6.10156 -4.14439 0.63799 0.70173 2.53333 2.90666 3.27973 3.32009 3.36277 3.42216 3.62512 4.10941 4.12506 4.35488 4.39807 4.48620 4.83542 5.13113 5.18149 5.25990 5.26466 5.53100 5.58985 5.63296 5.73510 5.83821 6.09538 6.09613 6.45856 6.63696 6.97170 7.56248 7.62633 7.86823 8.16549 8.25649 8.91281 9.49951 11.01420 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035582 B = 0.003505 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.716029 B = 7986.245745 C = 8192.554047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.354 6.354 12 C 0.459 3.541 13 O -0.512 6.512 14 C -0.079 4.079 15 C -0.143 4.143 16 C 0.145 3.855 17 F -0.126 7.126 18 C -0.165 4.165 19 C -0.060 4.060 20 C -0.165 4.165 21 C 0.145 3.855 22 F -0.126 7.126 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -23.363 0.010 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.271 6.271 12 C 0.302 3.698 13 O -0.401 6.401 14 C -0.116 4.116 15 C -0.145 4.145 16 C 0.126 3.874 17 F -0.104 7.104 18 C -0.184 4.184 19 C -0.079 4.079 20 C -0.184 4.184 21 C 0.126 3.874 22 F -0.104 7.104 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.742 -23.119 0.010 23.821 hybrid contribution 0.382 1.218 0.000 1.276 sum 6.123 -21.901 0.010 22.741 Atomic orbital electron populations 1.69984 1.06092 1.26887 1.49867 1.24989 0.94924 0.99409 0.94866 0.86410 0.80055 0.83118 0.77702 1.19590 1.20818 1.20813 1.21019 0.93222 0.90097 1.52071 0.92202 1.19183 0.94194 0.89008 0.98924 1.23674 0.96413 0.78626 1.00994 1.86516 1.42301 1.15717 1.82525 1.23142 0.86545 0.87025 0.73123 1.90639 1.15636 1.88259 1.45563 1.20117 0.96796 0.86984 1.07708 1.19347 1.02585 1.00785 0.91813 1.17179 0.95218 0.94600 0.80446 1.91545 1.87210 1.86495 1.45197 1.21186 0.98539 0.98214 1.00412 1.20851 0.98023 0.98480 0.90500 1.21186 0.98575 0.98191 1.00399 1.17175 0.95197 0.94642 0.80421 1.91543 1.87116 1.86688 1.45102 0.92756 0.95294 0.95301 0.92260 0.92273 0.86011 0.86014 0.83837 0.83815 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.73 5.40 37.16 0.20 1.93 16 11 O -0.35 -7.34 10.22 -39.27 -0.40 -7.74 16 12 C 0.46 8.40 7.95 36.00 0.29 8.69 16 13 O -0.51 -10.62 15.78 -18.75 -0.30 -10.91 16 14 C -0.08 -1.04 5.59 -29.04 -0.16 -1.21 16 15 C -0.14 -1.82 4.39 -104.49 -0.46 -2.27 16 16 C 0.15 1.71 7.24 -39.42 -0.29 1.42 16 17 F -0.13 -1.62 16.48 2.25 0.04 -1.58 16 18 C -0.16 -1.45 10.03 -39.50 -0.40 -1.85 16 19 C -0.06 -0.44 10.04 -39.60 -0.40 -0.84 16 20 C -0.16 -1.45 10.03 -39.50 -0.40 -1.85 16 21 C 0.15 1.71 7.24 -39.43 -0.29 1.42 16 22 F -0.13 -1.62 16.48 2.25 0.04 -1.58 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 27 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 28 H 0.12 1.38 7.64 -51.92 -0.40 0.99 16 29 H 0.12 1.38 7.64 -51.93 -0.40 0.99 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -32.75 298.99 -6.15 -38.90 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -3.29 Total: -4.56 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.45 Total: -7.76 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.70 Total: -18.65 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.07 Total: -3.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.75 -6.15 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756628295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.908 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds