Wall clock time and date at job start Mon Mar 30 2020 00:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86803 * 119.99747 * 2 1 4 4 H 1.48497 * 109.47481 * 240.00425 * 3 2 1 5 5 H 1.48506 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46939 * 120.00195 * 3 2 1 7 7 C 1.40032 * 120.00665 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00408 * 193.69188 * 7 2 1 9 9 C 1.41542 * 119.99715 * 13.69680 * 7 2 1 10 10 C 1.41174 * 120.99774 * 201.14789 * 9 7 2 11 11 C 1.37590 * 119.02336 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11434 * 359.97438 * 11 10 9 13 13 C 1.32488 * 122.22534 * 0.02562 * 12 11 10 14 14 N 1.39362 * 119.58112 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99941 * 353.52474 * 14 13 12 16 16 O 1.21479 * 120.00059 * 4.71409 * 15 14 13 17 17 C 1.48486 * 120.00309 * 184.70573 * 15 14 13 18 18 N 1.32476 * 119.18229 * 359.73366 * 17 15 14 19 19 C 1.32113 * 120.76405 * 179.71788 * 18 17 15 20 20 C 1.38803 * 119.16511 * 0.54111 * 19 18 17 21 21 C 1.38809 * 118.51102 * 359.73754 * 20 19 18 22 22 N 1.32109 * 119.16301 * 359.97438 * 21 20 19 23 23 C 1.38626 * 120.83824 * 359.97438 * 13 12 11 24 24 H 0.96993 * 120.00497 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.48772 * 0.04496 * 10 9 7 26 26 H 1.07999 * 119.44559 * 180.02562 * 11 10 9 27 27 H 0.96999 * 120.00338 * 173.53029 * 14 13 12 28 28 H 1.08003 * 120.41886 * 180.27397 * 19 18 17 29 29 H 1.07999 * 120.74576 * 179.74813 * 20 19 18 30 30 H 1.08000 * 120.41858 * 180.02562 * 21 20 19 31 31 H 1.07994 * 120.60399 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0647 -1.2260 0.2208 9 6 1.3302 -2.4209 -0.2913 10 6 1.8563 -3.6658 0.1168 11 6 1.1642 -4.8152 -0.1880 12 7 0.0231 -4.7691 -0.8516 13 6 -0.5129 -3.6273 -1.2569 14 7 -1.7201 -3.6428 -1.9530 15 6 -2.2689 -4.8165 -2.3242 16 8 -1.7571 -5.8626 -1.9786 17 6 -3.4993 -4.8310 -3.1554 18 7 -4.0470 -3.6807 -3.5186 19 6 -5.1385 -3.6571 -4.2625 20 6 -5.7167 -4.8569 -4.6535 21 6 -5.1190 -6.0429 -4.2500 22 7 -4.0249 -5.9937 -3.5113 23 6 0.1113 -2.4173 -0.9964 24 1 -0.4850 0.8399 0.0004 25 1 2.7881 -3.7151 0.6605 26 1 1.5602 -5.7712 0.1213 27 1 -2.1654 -2.8090 -2.1705 28 1 -5.5779 -2.7161 -4.5591 29 1 -6.6114 -4.8673 -5.2583 30 1 -5.5427 -6.9940 -4.5371 31 1 -0.3292 -1.4887 -1.3282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763908859.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:07 Heat of formation + Delta-G solvation = 63.434344 kcal Electronic energy + Delta-G solvation = -19057.559372 eV Core-core repulsion = 15918.804504 eV Total energy + Delta-G solvation = -3138.754868 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.24269 -39.31901 -37.63602 -34.52790 -34.05418 -33.51275 -32.31296 -30.52232 -28.68663 -26.03111 -25.43831 -24.65455 -22.09644 -21.80675 -20.10335 -18.23229 -17.87578 -17.36711 -16.27370 -15.63351 -15.44304 -15.28089 -15.04959 -14.18239 -14.00610 -13.97425 -13.77024 -13.55404 -12.81853 -12.60290 -12.27567 -11.43790 -11.33773 -11.18460 -11.08050 -10.90653 -10.31081 -10.16331 -9.90315 -9.74730 -9.60883 -9.44119 -9.37975 -8.02220 -7.76658 -7.04189 -6.76523 -4.62902 0.37338 0.90424 2.52212 2.80481 3.00879 3.03659 3.07493 3.13338 3.31700 3.84132 3.87798 3.96440 4.32679 4.39465 4.68199 4.72200 4.82927 5.14372 5.48071 5.69285 5.95829 6.07559 6.57075 6.65575 6.74529 6.80548 6.94690 7.14171 7.37465 7.45348 7.63655 7.85728 7.98974 8.19243 8.39747 8.67496 8.74895 8.81897 9.68104 10.05932 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.004656 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.774509 B = 6011.912480 C = 7059.704127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.140 3.860 10 C -0.284 4.284 11 C 0.120 3.880 12 N -0.558 5.558 13 C 0.333 3.667 14 N -0.634 5.634 15 C 0.564 3.436 16 O -0.443 6.443 17 C 0.294 3.706 18 N -0.495 5.495 19 C 0.145 3.855 20 C -0.218 4.218 21 C 0.144 3.856 22 N -0.470 5.470 23 C -0.240 4.240 24 H 0.283 0.717 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.419 0.581 28 H 0.175 0.825 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.953 -1.339 -8.493 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.307 4.307 11 C -0.034 4.034 12 N -0.277 5.277 13 C 0.109 3.891 14 N -0.281 5.281 15 C 0.343 3.657 16 O -0.308 6.308 17 C 0.024 3.976 18 N -0.212 5.212 19 C -0.021 4.021 20 C -0.240 4.240 21 C -0.023 4.023 22 N -0.185 5.185 23 C -0.265 4.265 24 H 0.094 0.906 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.256 0.744 28 H 0.192 0.808 29 H 0.170 0.830 30 H 0.192 0.808 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.408 -2.790 -7.866 13.341 hybrid contribution -0.470 2.033 -0.510 2.148 sum -10.878 -0.758 -8.376 13.750 Atomic orbital electron populations 1.69726 1.07668 1.29450 1.34525 1.25985 0.94832 1.01583 0.91911 0.86256 0.80044 0.79709 0.80095 1.18711 1.20208 1.18870 1.19587 0.96873 0.90355 1.41302 0.89976 1.17575 0.90332 0.92312 0.86664 1.21884 1.03912 0.93839 1.11109 1.21743 0.90399 0.96799 0.94493 1.67189 1.14303 1.27069 1.19149 1.18157 0.85899 0.91108 0.93904 1.43126 1.21796 1.08818 1.54349 1.17361 0.82254 0.85120 0.80967 1.90893 1.58687 1.31014 1.50201 1.23312 0.95589 0.84225 0.94458 1.68409 1.10902 1.30260 1.11613 1.23329 0.89785 0.99006 0.90002 1.23147 1.03019 0.94989 1.02876 1.23397 0.89603 0.99212 0.90060 1.68294 1.10445 1.29201 1.10523 1.21774 1.00670 0.95748 1.08338 0.90597 0.87914 0.85765 0.74422 0.80806 0.83034 0.80848 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.32 10.58 55.55 0.59 -18.73 16 2 C 0.08 1.82 5.28 -17.35 -0.09 1.73 16 3 Si 0.91 17.83 29.58 -169.99 -5.03 12.80 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.55 9.14 -37.65 -0.34 -11.90 16 8 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 9 C 0.14 3.69 5.65 -106.55 -0.60 3.09 16 10 C -0.28 -7.01 9.90 -38.70 -0.38 -7.39 16 11 C 0.12 2.93 11.15 -17.68 -0.20 2.73 16 12 N -0.56 -14.65 7.85 -12.54 -0.10 -14.75 16 13 C 0.33 8.40 7.41 -154.78 -1.15 7.26 16 14 N -0.63 -13.67 5.37 -12.17 -0.07 -13.74 16 15 C 0.56 12.12 7.81 -12.04 -0.09 12.02 16 16 O -0.44 -11.09 15.12 5.38 0.08 -11.00 16 17 C 0.29 5.12 7.59 -157.07 -1.19 3.92 16 18 N -0.49 -7.15 9.58 -11.13 -0.11 -7.26 16 19 C 0.15 1.42 11.30 -17.22 -0.19 1.23 16 20 C -0.22 -1.73 10.18 -39.16 -0.40 -2.13 16 21 C 0.14 1.50 11.30 -17.22 -0.19 1.30 16 22 N -0.47 -7.51 10.13 -11.13 -0.11 -7.62 16 23 C -0.24 -6.20 8.66 -38.46 -0.33 -6.54 16 24 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.12 2.64 8.06 -52.49 -0.42 2.21 16 27 H 0.42 7.94 8.01 -40.82 -0.33 7.62 16 28 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 29 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 30 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.14 3.56 5.87 -52.49 -0.31 3.25 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -33.04 285.26 -7.91 -40.95 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.30 Total: 9.71 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -5.17 Total: 5.33 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.20 Total: -62.09 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.04 -7.91 -40.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763908859.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.385 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds