Wall clock time and date at job start Mon Mar 30 2020 00:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86803 * 119.99747 * 2 1 4 4 H 1.48497 * 109.47481 * 240.00425 * 3 2 1 5 5 H 1.48506 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46939 * 120.00195 * 3 2 1 7 7 C 1.40032 * 120.00665 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00408 * 193.69188 * 7 2 1 9 9 C 1.41542 * 119.99715 * 13.69680 * 7 2 1 10 10 C 1.41174 * 120.99774 * 201.14789 * 9 7 2 11 11 C 1.37590 * 119.02336 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11434 * 359.97438 * 11 10 9 13 13 C 1.32488 * 122.22534 * 0.02562 * 12 11 10 14 14 N 1.39362 * 119.58112 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99941 * 353.52474 * 14 13 12 16 16 O 1.21479 * 120.00059 * 4.71409 * 15 14 13 17 17 C 1.48486 * 120.00309 * 184.70573 * 15 14 13 18 18 N 1.32476 * 119.18229 * 359.73366 * 17 15 14 19 19 C 1.32113 * 120.76405 * 179.71788 * 18 17 15 20 20 C 1.38803 * 119.16511 * 0.54111 * 19 18 17 21 21 C 1.38809 * 118.51102 * 359.73754 * 20 19 18 22 22 N 1.32109 * 119.16301 * 359.97438 * 21 20 19 23 23 C 1.38626 * 120.83824 * 359.97438 * 13 12 11 24 24 H 0.96993 * 120.00497 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.48772 * 0.04496 * 10 9 7 26 26 H 1.07999 * 119.44559 * 180.02562 * 11 10 9 27 27 H 0.96999 * 120.00338 * 173.53029 * 14 13 12 28 28 H 1.08003 * 120.41886 * 180.27397 * 19 18 17 29 29 H 1.07999 * 120.74576 * 179.74813 * 20 19 18 30 30 H 1.08000 * 120.41858 * 180.02562 * 21 20 19 31 31 H 1.07994 * 120.60399 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0647 -1.2260 0.2208 9 6 1.3302 -2.4209 -0.2913 10 6 1.8563 -3.6658 0.1168 11 6 1.1642 -4.8152 -0.1880 12 7 0.0231 -4.7691 -0.8516 13 6 -0.5129 -3.6273 -1.2569 14 7 -1.7201 -3.6428 -1.9530 15 6 -2.2689 -4.8165 -2.3242 16 8 -1.7571 -5.8626 -1.9786 17 6 -3.4993 -4.8310 -3.1554 18 7 -4.0470 -3.6807 -3.5186 19 6 -5.1385 -3.6571 -4.2625 20 6 -5.7167 -4.8569 -4.6535 21 6 -5.1190 -6.0429 -4.2500 22 7 -4.0249 -5.9937 -3.5113 23 6 0.1113 -2.4173 -0.9964 24 1 -0.4850 0.8399 0.0004 25 1 2.7881 -3.7151 0.6605 26 1 1.5602 -5.7712 0.1213 27 1 -2.1654 -2.8090 -2.1705 28 1 -5.5779 -2.7161 -4.5591 29 1 -6.6114 -4.8673 -5.2583 30 1 -5.5427 -6.9940 -4.5371 31 1 -0.3292 -1.4887 -1.3282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763908859.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:07 Heat of formation + Delta-G solvation = 40.556980 kcal Electronic energy + Delta-G solvation = -19058.551409 eV Core-core repulsion = 15918.804504 eV Total energy + Delta-G solvation = -3139.746905 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30662 -41.00281 -39.42552 -36.25513 -35.70219 -34.76306 -33.29943 -32.44375 -30.48645 -27.95516 -26.69133 -25.52210 -23.89008 -23.48314 -21.77514 -19.65605 -19.54751 -18.59569 -17.58131 -17.09247 -16.90910 -16.75493 -16.21234 -16.04187 -15.67425 -15.38841 -15.17952 -14.63112 -14.48128 -14.34318 -14.14917 -13.16786 -12.88383 -12.69125 -12.32398 -12.08854 -12.05575 -11.93055 -11.58879 -11.27983 -11.19420 -10.73181 -10.40287 -9.98790 -9.68566 -8.92863 -8.61018 -6.58860 -0.64902 0.09272 0.73991 0.99888 1.42234 1.53596 1.56778 1.65670 1.77063 2.20633 2.73908 2.81130 2.86407 3.23524 3.64984 3.73251 3.81808 4.10365 4.16030 4.39317 4.70960 4.77555 4.79852 4.90632 5.06665 5.24178 5.28653 5.46092 5.57252 5.88868 5.90399 6.05983 6.35270 6.51903 6.75470 6.81783 6.85690 7.10339 7.77751 8.25856 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.004656 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.774509 B = 6011.912480 C = 7059.704127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.037 3.963 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.478 4.478 8 H 0.087 0.913 9 C 0.111 3.889 10 C -0.296 4.296 11 C 0.114 3.886 12 N -0.585 5.585 13 C 0.328 3.672 14 N -0.629 5.629 15 C 0.561 3.439 16 O -0.492 6.492 17 C 0.263 3.737 18 N -0.511 5.511 19 C 0.134 3.866 20 C -0.174 4.174 21 C 0.129 3.871 22 N -0.507 5.507 23 C -0.258 4.258 24 H 0.294 0.706 25 H 0.120 0.880 26 H 0.152 0.848 27 H 0.427 0.573 28 H 0.218 0.782 29 H 0.209 0.791 30 H 0.213 0.787 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 0.004 -10.027 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.508 4.508 8 H 0.106 0.894 9 C 0.103 3.897 10 C -0.319 4.319 11 C -0.040 4.040 12 N -0.305 5.305 13 C 0.103 3.897 14 N -0.277 5.277 15 C 0.343 3.657 16 O -0.361 6.361 17 C -0.007 4.007 18 N -0.229 5.229 19 C -0.032 4.032 20 C -0.195 4.195 21 C -0.036 4.036 22 N -0.223 5.223 23 C -0.284 4.284 24 H 0.105 0.895 25 H 0.138 0.862 26 H 0.170 0.830 27 H 0.266 0.734 28 H 0.234 0.766 29 H 0.226 0.774 30 H 0.229 0.771 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.425 -1.446 -9.419 15.659 hybrid contribution -0.064 1.604 -0.133 1.611 sum -12.489 0.158 -9.553 15.725 Atomic orbital electron populations 1.69767 1.09113 1.31117 1.33596 1.26899 0.95633 1.04793 0.90722 0.85101 0.78670 0.74906 0.80145 1.18374 1.18881 1.18307 1.19919 0.97371 0.91205 1.42307 0.89449 1.18016 0.90986 0.93515 0.87213 1.22083 1.04717 0.93521 1.11601 1.22225 0.89960 0.98026 0.93759 1.67309 1.15279 1.27639 1.20282 1.18405 0.86870 0.90799 0.93654 1.43109 1.20892 1.09775 1.53945 1.18012 0.83225 0.84041 0.80382 1.90831 1.60732 1.32255 1.52232 1.22186 0.95520 0.85941 0.97059 1.68303 1.12789 1.29073 1.12716 1.24198 0.88354 1.01811 0.88788 1.23750 1.02973 0.92932 0.99867 1.24185 0.88174 1.02130 0.89066 1.68151 1.12862 1.29076 1.12211 1.21758 1.01294 0.95779 1.09568 0.89519 0.86190 0.83041 0.73373 0.76556 0.77405 0.77077 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.01 10.58 21.84 0.23 -39.78 16 2 C 0.04 1.76 5.28 85.29 0.45 2.21 16 3 Si 0.99 35.84 29.58 68.60 2.03 37.87 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 6 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 7 C -0.48 -24.93 9.14 23.52 0.22 -24.71 16 8 H 0.09 4.31 7.88 -2.91 -0.02 4.29 16 9 C 0.11 6.07 5.65 -21.11 -0.12 5.95 16 10 C -0.30 -15.02 9.90 22.84 0.23 -14.80 16 11 C 0.11 5.73 11.15 84.50 0.94 6.67 16 12 N -0.58 -32.09 7.85 -193.58 -1.52 -33.61 16 13 C 0.33 17.34 7.41 132.79 0.98 18.32 16 14 N -0.63 -28.62 5.37 -310.73 -1.67 -30.29 16 15 C 0.56 25.42 7.81 86.98 0.68 26.10 16 16 O -0.49 -26.08 15.12 -3.65 -0.06 -26.14 16 17 C 0.26 9.30 7.59 137.66 1.05 10.34 16 18 N -0.51 -14.33 9.58 -189.12 -1.81 -16.14 16 19 C 0.13 2.13 11.30 84.79 0.96 3.09 16 20 C -0.17 -1.90 10.18 22.54 0.23 -1.67 16 21 C 0.13 2.30 11.30 84.79 0.96 3.26 16 22 N -0.51 -16.07 10.13 -189.12 -1.92 -17.98 16 23 C -0.26 -13.96 8.66 22.99 0.20 -13.76 16 24 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 25 H 0.12 5.49 8.06 -2.91 -0.02 5.47 16 26 H 0.15 6.53 8.06 -2.91 -0.02 6.51 16 27 H 0.43 17.09 8.01 -92.71 -0.74 16.35 16 28 H 0.22 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.21 -0.03 8.06 -2.91 -0.02 -0.05 16 30 H 0.21 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.13 7.21 5.87 -2.91 -0.02 7.19 16 Total: -1.00 -77.52 285.26 2.51 -75.01 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.45 Total: 30.05 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.77 Total: 21.01 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -6.69 Total: -137.80 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -77.52 2.51 -75.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763908859.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.563 kcal (2) G-P(sol) polarization free energy of solvation -77.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds