Wall clock time and date at job start Mon Mar 30 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42099 * 109.47018 * 63.61397 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.38239 * 119.99643 * 269.72723 * 14 13 11 16 16 C 1.38244 * 119.99539 * 179.76378 * 15 14 13 17 17 C 1.38227 * 119.99876 * 0.48415 * 16 15 14 18 18 C 1.50699 * 120.00118 * 179.76696 * 17 16 15 19 19 F 1.39897 * 109.47503 * 270.02419 * 18 17 16 20 20 C 1.38241 * 120.00353 * 359.79216 * 17 16 15 21 21 C 1.38231 * 119.99675 * 359.95350 * 20 17 16 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 28 28 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 29 29 H 1.07995 * 120.00144 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.99390 * 180.25269 * 16 15 14 31 31 H 1.09007 * 109.46993 * 30.02014 * 18 17 16 32 32 H 1.08998 * 109.47432 * 150.01938 * 18 17 16 33 33 H 1.07998 * 119.99904 * 179.97438 * 20 17 16 34 34 H 1.08002 * 119.99726 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6366 -0.0009 12 8 6.3091 -2.0412 1.1992 13 6 6.2436 -4.4041 -0.0016 14 6 7.7409 -4.5740 -0.0010 15 6 8.4275 -4.6571 -1.1979 16 6 9.8017 -4.8080 -1.1973 17 6 10.4879 -4.8860 0.0001 18 6 11.9853 -5.0559 0.0007 19 9 12.3001 -6.4190 0.0002 20 6 9.8006 -4.8087 1.1970 21 6 8.4271 -4.6525 1.1964 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8907 27 1 5.8246 -4.8740 0.8883 28 1 5.8246 -4.8735 -0.8917 29 1 7.8909 -4.6006 -2.1333 30 1 10.3386 -4.8688 -2.1324 31 1 12.4047 -4.5858 -0.8889 32 1 12.4038 -4.5866 0.8911 33 1 10.3368 -4.8701 2.1325 34 1 7.8902 -4.5917 2.1315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790140207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:03 Heat of formation + Delta-G solvation = -102.667176 kcal Electronic energy + Delta-G solvation = -17276.167291 eV Core-core repulsion = 14213.440960 eV Total energy + Delta-G solvation = -3062.726332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.57775 -40.27722 -36.77888 -35.71877 -34.51738 -33.26039 -31.91480 -29.84238 -27.61538 -25.71095 -23.75539 -22.85218 -21.78871 -19.21880 -18.35389 -17.60670 -17.14797 -16.82201 -16.60300 -16.43012 -16.10983 -15.91426 -15.54477 -15.36059 -14.91027 -14.65562 -14.43755 -14.17271 -13.61890 -13.51220 -13.15010 -13.04812 -12.78728 -12.46012 -12.14784 -12.07464 -11.89293 -11.77579 -11.76627 -11.55650 -11.06333 -10.79953 -9.90009 -9.73826 -9.05826 -8.33400 -6.38509 0.00624 0.43335 0.81231 1.33344 1.37340 1.48819 1.77767 2.33526 2.74003 2.88529 3.01533 3.52655 3.71732 3.82038 4.01467 4.04915 4.17550 4.20996 4.34405 4.39483 4.52658 4.72031 4.72226 4.78657 4.83103 5.02889 5.10585 5.30352 5.32257 5.37885 5.52117 5.56962 5.58920 6.00663 6.22740 6.68530 7.26237 8.82976 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.051699 B = 0.003288 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.464161 B = 8513.823756 C = 8668.838338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.941 3.059 4 H -0.245 1.245 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.001 4.001 10 C -0.420 4.420 11 S 1.285 4.715 12 O -0.910 6.910 13 C -0.405 4.405 14 C -0.067 4.067 15 C -0.115 4.115 16 C -0.096 4.096 17 C -0.151 4.151 18 C 0.104 3.896 19 F -0.230 7.230 20 C -0.108 4.108 21 C -0.144 4.144 22 H 0.268 0.732 23 H -0.001 1.001 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.140 0.860 27 H 0.083 0.917 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.560 -9.977 -7.335 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.763 3.237 4 H -0.168 1.168 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.571 4.571 8 H 0.055 0.945 9 C -0.039 4.039 10 C -0.557 4.557 11 S 1.488 4.512 12 O -0.906 6.906 13 C -0.541 4.541 14 C -0.069 4.069 15 C -0.133 4.133 16 C -0.114 4.114 17 C -0.152 4.152 18 C 0.050 3.950 19 F -0.211 7.211 20 C -0.126 4.126 21 C -0.163 4.163 22 H 0.077 0.923 23 H 0.018 0.982 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.158 0.842 27 H 0.102 0.898 28 H 0.187 0.813 29 H 0.189 0.811 30 H 0.177 0.823 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 25.015 -9.112 -7.302 27.606 hybrid contribution -1.516 -0.478 2.654 3.093 sum 23.499 -9.590 -4.648 25.803 Atomic orbital electron populations 1.70050 1.08186 1.28301 1.52322 1.26003 0.95656 1.03474 0.94012 0.85794 0.79077 0.78452 0.80333 1.16836 1.20991 1.18327 1.21416 0.91518 0.93326 1.50792 0.94513 1.19188 0.94994 0.92600 0.97141 1.27511 1.18208 1.02782 1.07223 1.69686 0.85424 0.85970 1.10123 1.92982 1.75149 1.69217 1.53248 1.26717 0.97524 1.19976 1.09929 1.19389 0.93247 0.99963 0.94293 1.21542 0.94603 0.99081 0.98116 1.21482 0.94438 0.97178 0.98271 1.20547 0.96980 1.03642 0.94045 1.21026 0.90529 0.77035 1.06429 1.92773 1.93827 1.36164 1.98343 1.21197 0.93758 0.98913 0.98758 1.21204 0.95361 1.01719 0.98013 0.92322 0.98240 0.93008 0.92554 0.84179 0.89827 0.81289 0.81098 0.82266 0.86929 0.88582 0.85003 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.94 44.30 27.47 68.60 1.88 46.18 16 4 H -0.24 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.26 -11.96 6.54 99.48 0.65 -11.31 16 7 C -0.53 -30.77 9.66 25.60 0.25 -30.53 16 8 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 9 C 0.00 -0.04 4.05 29.85 0.12 0.08 16 10 C -0.42 -15.08 5.86 71.98 0.42 -14.66 16 11 S 1.29 35.84 13.14 -56.49 -0.74 35.10 16 12 O -0.91 -38.14 18.14 -148.98 -2.70 -40.85 16 13 C -0.41 -8.52 6.05 71.23 0.43 -8.09 16 14 C -0.07 -1.47 5.14 -19.87 -0.10 -1.57 16 15 C -0.11 -1.78 9.70 22.27 0.22 -1.56 16 16 C -0.10 -1.39 9.70 22.27 0.22 -1.18 16 17 C -0.15 -2.60 5.60 -19.87 -0.11 -2.71 16 18 C 0.10 1.28 7.67 71.24 0.55 1.83 16 19 F -0.23 -4.23 17.34 44.97 0.78 -3.45 16 20 C -0.11 -2.30 9.70 22.27 0.22 -2.09 16 21 C -0.14 -3.63 9.70 22.27 0.22 -3.42 16 22 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 23 H 0.00 -0.04 7.20 -2.39 -0.02 -0.06 16 24 H 0.05 2.12 7.57 -2.39 -0.02 2.11 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 27 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 28 H 0.17 2.12 8.08 -2.39 -0.02 2.10 16 29 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.11 0.75 8.09 -2.38 -0.02 0.73 16 32 H 0.10 0.90 8.09 -2.39 -0.02 0.88 16 33 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.10 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -83.36 311.04 3.43 -79.93 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.03 Total: 5.43 kcal Atomic # 6 Polarization: -65.96 SS G_CDS: 2.88 Total: -63.08 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.30 Total: -59.26 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -2.70 Total: -40.85 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.45 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Atomic # 16 Polarization: 35.84 SS G_CDS: -0.74 Total: 35.10 kcal Total: -83.36 3.43 -79.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790140207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.737 kcal (2) G-P(sol) polarization free energy of solvation -83.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds