Wall clock time and date at job start Mon Mar 30 2020 01:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99617 * 2 1 4 4 H 1.48501 * 109.46921 * 269.99522 * 3 2 1 5 5 H 1.48496 * 109.47586 * 29.99860 * 3 2 1 6 6 H 1.48507 * 109.46923 * 150.00150 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47448 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99860 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00297 * 180.02562 * 11 10 9 14 14 N 1.40105 * 120.00264 * 180.02562 * 13 11 10 15 15 C 1.39845 * 120.00311 * 180.02562 * 14 13 11 16 16 C 1.38869 * 120.06224 * 359.44502 * 15 14 13 17 17 C 1.38150 * 119.98769 * 179.79084 * 16 15 14 18 18 C 1.38258 * 120.13094 * 0.48611 * 17 16 15 19 19 C 1.38484 * 120.13512 * 359.74917 * 18 17 16 20 20 F 1.35104 * 119.99769 * 179.97438 * 19 18 17 21 21 C 1.38489 * 120.00260 * 0.02562 * 19 18 17 22 22 F 1.35099 * 120.05794 * 180.02562 * 21 19 18 23 23 H 0.97000 * 120.00440 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46716 * 59.99855 * 9 7 2 25 25 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 26 26 H 1.09009 * 109.47130 * 60.00406 * 10 9 7 27 27 H 1.09006 * 109.47246 * 300.00746 * 10 9 7 28 28 H 0.96995 * 120.00339 * 0.02562 * 13 11 10 29 29 H 0.97005 * 119.99838 * 359.72387 * 14 13 11 30 30 H 1.07998 * 120.00804 * 0.02971 * 16 15 14 31 31 H 1.08002 * 119.93132 * 180.21049 * 17 16 15 32 32 H 1.07998 * 119.93146 * 179.76417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2452 -3.6620 0.0015 11 6 1.4918 -4.9671 0.0033 12 8 0.2790 -4.9671 0.0041 13 7 2.1657 -6.1343 0.0039 14 7 1.4653 -7.3477 0.0050 15 6 2.1645 -8.5587 0.0062 16 6 3.5531 -8.5603 -0.0054 17 6 4.2423 -9.7576 0.0002 18 6 3.5523 -10.9556 0.0072 19 6 2.1675 -10.9603 0.0138 20 9 1.4959 -12.1326 0.0200 21 6 1.4709 -9.7633 0.0130 22 9 0.1200 -9.7665 0.0200 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8713 -3.6046 -0.8890 28 1 3.1357 -6.1343 0.0036 29 1 0.4952 -7.3477 0.0094 30 1 4.0942 -7.6257 -0.0148 31 1 5.3224 -9.7577 -0.0054 32 1 4.0943 -11.8897 0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812523476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:23 Heat of formation + Delta-G solvation = -71.268752 kcal Electronic energy + Delta-G solvation = -19316.736880 eV Core-core repulsion = 15721.451662 eV Total energy + Delta-G solvation = -3595.285219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.61076 -48.67755 -40.01425 -38.90025 -35.96053 -33.60759 -32.33982 -30.99950 -30.52449 -28.51793 -25.72475 -23.43288 -22.92090 -21.75509 -20.32340 -18.71190 -17.95036 -17.58934 -16.90847 -16.68875 -16.53007 -15.92152 -15.31535 -15.19562 -15.07848 -14.99008 -14.50647 -14.32626 -13.59854 -13.46247 -13.19372 -12.52733 -12.29648 -12.24089 -11.80689 -11.53644 -11.31446 -10.99735 -10.68033 -10.11192 -9.86664 -9.57689 -9.51018 -9.20255 -9.05996 -8.40844 -7.51743 -6.04304 -4.09741 0.66343 0.90072 1.78576 2.89094 3.17801 3.28606 3.35116 3.37163 3.56090 4.05372 4.16006 4.40219 4.40838 4.43120 4.88493 5.08852 5.29307 5.31050 5.44147 5.60494 5.71697 5.95534 5.99907 6.00120 6.31440 6.57208 6.78142 7.23731 7.58289 7.64082 7.71563 7.95775 8.26058 8.50022 8.97899 9.54564 11.06539 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.049365 B = 0.003050 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.071581 B = 9178.589997 C = 9725.201550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.117 4.117 11 C 0.510 3.490 12 O -0.527 6.527 13 N -0.536 5.536 14 N -0.531 5.531 15 C 0.225 3.775 16 C -0.192 4.192 17 C -0.041 4.041 18 C -0.195 4.195 19 C 0.124 3.876 20 F -0.128 7.128 21 C -0.017 4.017 22 F -0.131 7.131 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.420 0.580 29 H 0.439 0.561 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.546 -20.917 0.009 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.158 4.158 11 C 0.299 3.701 12 O -0.400 6.400 13 N -0.287 5.287 14 N -0.253 5.253 15 C 0.116 3.884 16 C -0.216 4.216 17 C -0.060 4.060 18 C -0.216 4.216 19 C 0.103 3.897 20 F -0.106 7.106 21 C -0.044 4.044 22 F -0.110 7.110 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.262 0.738 29 H 0.283 0.717 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.457 -20.575 0.012 22.644 hybrid contribution 0.093 0.629 -0.001 0.636 sum 9.551 -19.946 0.011 22.114 Atomic orbital electron populations 1.69990 1.06100 1.26787 1.49782 1.25027 0.94844 0.99337 0.95131 0.86558 0.79745 0.83331 0.78118 1.20619 1.21184 1.19821 1.21160 0.92973 0.90756 1.51955 0.92414 1.18946 0.93115 0.89079 0.98942 1.21908 1.00923 0.89753 1.03263 1.22149 0.89248 0.83835 0.74866 1.90719 1.14220 1.86733 1.48318 1.45571 1.08134 0.95940 1.79024 1.43362 1.07263 0.94348 1.80292 1.17513 0.92007 0.83172 0.95678 1.20459 0.90542 0.99777 1.10858 1.20776 1.00358 0.90405 0.94418 1.20818 0.90865 1.00292 1.09627 1.17335 0.90367 0.79541 1.02480 1.91529 1.80605 1.44807 1.93658 1.16796 0.77527 0.91757 1.18295 1.91497 1.27447 1.97035 1.94983 0.92817 0.95594 0.95578 0.89445 0.89432 0.73845 0.71700 0.84696 0.84076 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.94 4.26 -27.89 -0.12 0.82 16 10 C -0.12 -2.14 5.64 -27.89 -0.16 -2.29 16 11 C 0.51 9.04 7.95 -10.99 -0.09 8.96 16 12 O -0.53 -11.76 15.82 5.56 0.09 -11.67 16 13 N -0.54 -7.04 6.22 31.22 0.19 -6.85 16 14 N -0.53 -7.06 6.46 32.45 0.21 -6.85 16 15 C 0.23 2.53 6.73 -83.69 -0.56 1.97 16 16 C -0.19 -1.61 9.48 -39.38 -0.37 -1.98 16 17 C -0.04 -0.27 10.04 -39.61 -0.40 -0.67 16 18 C -0.19 -1.51 10.02 -39.48 -0.40 -1.91 16 19 C 0.12 1.31 7.30 -39.40 -0.29 1.02 16 20 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 21 C -0.02 -0.21 7.32 -39.21 -0.29 -0.49 16 22 F -0.13 -1.79 16.55 2.25 0.04 -1.75 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.03 0.73 8.10 -51.92 -0.42 0.30 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.42 3.93 6.61 -182.60 -1.21 2.73 16 29 H 0.44 6.47 7.49 -182.59 -1.37 5.10 16 30 H 0.14 0.85 6.20 -52.49 -0.33 0.53 16 31 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 294.62 15.07 4.44 4.44 Total: -1.00 -33.15 294.62 -7.33 -40.48 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.97 Total: 1.30 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.08 Total: -7.72 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 1.14 Total: -39.67 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.15 -7.33 -40.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812523476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.787 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds