Wall clock time and date at job start Mon Mar 30 2020 01:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99617 * 2 1 4 4 H 1.48501 * 109.46921 * 269.99522 * 3 2 1 5 5 H 1.48496 * 109.47586 * 29.99860 * 3 2 1 6 6 H 1.48507 * 109.46923 * 150.00150 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47448 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99860 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00297 * 180.02562 * 11 10 9 14 14 N 1.40105 * 120.00264 * 180.02562 * 13 11 10 15 15 C 1.39845 * 120.00311 * 180.02562 * 14 13 11 16 16 C 1.38869 * 120.06224 * 359.44502 * 15 14 13 17 17 C 1.38150 * 119.98769 * 179.79084 * 16 15 14 18 18 C 1.38258 * 120.13094 * 0.48611 * 17 16 15 19 19 C 1.38484 * 120.13512 * 359.74917 * 18 17 16 20 20 F 1.35104 * 119.99769 * 179.97438 * 19 18 17 21 21 C 1.38489 * 120.00260 * 0.02562 * 19 18 17 22 22 F 1.35099 * 120.05794 * 180.02562 * 21 19 18 23 23 H 0.97000 * 120.00440 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46716 * 59.99855 * 9 7 2 25 25 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 26 26 H 1.09009 * 109.47130 * 60.00406 * 10 9 7 27 27 H 1.09006 * 109.47246 * 300.00746 * 10 9 7 28 28 H 0.96995 * 120.00339 * 0.02562 * 13 11 10 29 29 H 0.97005 * 119.99838 * 359.72387 * 14 13 11 30 30 H 1.07998 * 120.00804 * 0.02971 * 16 15 14 31 31 H 1.08002 * 119.93132 * 180.21049 * 17 16 15 32 32 H 1.07998 * 119.93146 * 179.76417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2452 -3.6620 0.0015 11 6 1.4918 -4.9671 0.0033 12 8 0.2790 -4.9671 0.0041 13 7 2.1657 -6.1343 0.0039 14 7 1.4653 -7.3477 0.0050 15 6 2.1645 -8.5587 0.0062 16 6 3.5531 -8.5603 -0.0054 17 6 4.2423 -9.7576 0.0002 18 6 3.5523 -10.9556 0.0072 19 6 2.1675 -10.9603 0.0138 20 9 1.4959 -12.1326 0.0200 21 6 1.4709 -9.7633 0.0130 22 9 0.1200 -9.7665 0.0200 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8713 -3.6046 -0.8890 28 1 3.1357 -6.1343 0.0036 29 1 0.4952 -7.3477 0.0094 30 1 4.0942 -7.6257 -0.0148 31 1 5.3224 -9.7577 -0.0054 32 1 4.0943 -11.8897 0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812523476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:23 Heat of formation + Delta-G solvation = -93.878013 kcal Electronic energy + Delta-G solvation = -19317.717292 eV Core-core repulsion = 15721.451662 eV Total energy + Delta-G solvation = -3596.265630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.48953 -49.58243 -41.16599 -39.91214 -37.05129 -35.57608 -33.62313 -32.60935 -31.26672 -29.54408 -27.50523 -24.49072 -23.88851 -23.13034 -21.67809 -19.69709 -19.15110 -18.50886 -18.41770 -17.63739 -17.41516 -17.36996 -16.69034 -16.46301 -16.12539 -16.03564 -15.74070 -15.24933 -15.06284 -14.71425 -14.23509 -13.92162 -13.90658 -13.27158 -12.89370 -12.81930 -12.54865 -12.48486 -12.46136 -11.92828 -11.66572 -11.32119 -11.05705 -10.58602 -10.51544 -9.81329 -8.48465 -8.17184 -6.30964 -0.07247 0.16419 0.72391 1.45019 1.46965 1.53613 1.57864 2.43598 2.46262 2.79058 3.01695 3.16923 3.38120 3.68393 3.80792 3.85078 4.26926 4.42174 4.49880 4.54540 4.77020 4.98632 5.02813 5.07410 5.30226 5.44704 5.51609 5.62315 5.80750 5.85679 6.12236 6.18666 6.49130 6.88278 7.25167 7.39754 8.95491 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.049365 B = 0.003050 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.071581 B = 9178.589997 C = 9725.201550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.252 1.252 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.039 3.961 10 C -0.104 4.104 11 C 0.512 3.488 12 O -0.586 6.586 13 N -0.507 5.507 14 N -0.548 5.548 15 C 0.206 3.794 16 C -0.184 4.184 17 C -0.025 4.025 18 C -0.177 4.177 19 C 0.103 3.897 20 F -0.139 7.139 21 C -0.045 4.045 22 F -0.151 7.151 23 H 0.262 0.738 24 H -0.017 1.017 25 H -0.016 1.016 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.441 0.559 29 H 0.428 0.572 30 H 0.161 0.839 31 H 0.187 0.813 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.116 -21.576 0.008 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.176 1.176 7 C -0.578 4.578 8 H 0.100 0.900 9 C 0.001 3.999 10 C -0.145 4.145 11 C 0.301 3.699 12 O -0.464 6.464 13 N -0.257 5.257 14 N -0.271 5.271 15 C 0.100 3.900 16 C -0.208 4.208 17 C -0.044 4.044 18 C -0.198 4.198 19 C 0.082 3.918 20 F -0.117 7.117 21 C -0.071 4.071 22 F -0.130 7.130 23 H 0.070 0.930 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.287 0.713 29 H 0.269 0.731 30 H 0.178 0.822 31 H 0.204 0.796 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 14.142 -21.314 0.011 25.579 hybrid contribution -1.242 0.646 -0.002 1.400 sum 12.900 -20.668 0.009 24.364 Atomic orbital electron populations 1.70179 1.08389 1.27777 1.51606 1.26139 0.95668 1.04015 0.94758 0.85326 0.78760 0.77747 0.78439 1.19845 1.21624 1.17562 1.21713 0.94241 0.91264 1.50534 0.89959 1.18735 0.93811 0.92363 0.94970 1.21630 0.99249 0.87346 1.06253 1.21890 0.88328 0.85030 0.74696 1.90706 1.16650 1.87592 1.51419 1.44969 1.08775 0.95289 1.76704 1.43387 1.06955 0.94586 1.82171 1.17760 0.93144 0.81899 0.97181 1.20917 0.89152 1.01833 1.08863 1.21305 1.02375 0.88917 0.91779 1.21282 0.89463 1.02248 1.06788 1.17678 0.91547 0.78719 1.03840 1.91497 1.81110 1.45211 1.93909 1.17223 0.76935 0.92977 1.19923 1.91435 1.29073 1.97195 1.95313 0.92956 0.99820 0.99796 0.86316 0.86290 0.71317 0.73059 0.82159 0.79602 0.81143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.01 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.54 -29.13 9.11 25.60 0.23 -28.90 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.05 4.26 29.85 0.13 2.18 16 10 C -0.10 -3.66 5.64 29.84 0.17 -3.49 16 11 C 0.51 18.17 7.95 87.66 0.70 18.86 16 12 O -0.59 -27.58 15.82 -3.03 -0.05 -27.63 16 13 N -0.51 -12.57 6.22 -173.54 -1.08 -13.65 16 14 N -0.55 -14.53 6.46 -51.24 -0.33 -14.86 16 15 C 0.21 4.39 6.73 38.20 0.26 4.65 16 16 C -0.18 -2.38 9.48 22.40 0.21 -2.17 16 17 C -0.03 -0.21 10.04 22.25 0.22 0.01 16 18 C -0.18 -2.09 10.02 22.33 0.22 -1.86 16 19 C 0.10 2.06 7.30 22.39 0.16 2.22 16 20 F -0.14 -3.15 17.18 44.97 0.77 -2.38 16 21 C -0.04 -1.08 7.32 22.51 0.16 -0.91 16 22 F -0.15 -4.42 16.55 44.97 0.74 -3.67 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.02 -1.00 8.10 -2.38 -0.02 -1.02 16 25 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 26 H 0.12 3.45 8.14 -2.38 -0.02 3.43 16 27 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 28 H 0.44 6.72 6.61 -213.32 -1.41 5.32 16 29 H 0.43 13.38 7.49 -213.31 -1.60 11.78 16 30 H 0.16 1.20 6.20 -2.91 -0.02 1.18 16 31 H 0.19 0.00 8.06 -2.91 -0.02 -0.03 16 32 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -78.36 294.62 3.48 -74.88 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -1.82 Total: 10.09 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 2.93 Total: -9.42 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -1.12 Total: -86.78 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.52 Total: -6.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -78.36 3.48 -74.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812523476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.002 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds