Wall clock time and date at job start Mon Mar 30 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48495 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47002 * 300.00427 * 3 2 1 6 6 H 1.48497 * 109.46906 * 59.99842 * 3 2 1 7 7 C 1.37877 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00104 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 11 16 16 C 1.38202 * 119.99930 * 359.72203 * 15 14 13 17 17 C 1.38431 * 120.00033 * 179.77120 * 16 15 14 18 18 F 1.35095 * 120.00505 * 180.27154 * 17 16 15 19 19 C 1.38473 * 119.99908 * 0.52836 * 17 16 15 20 20 C 1.38162 * 119.99620 * 359.72634 * 19 17 16 21 21 C 1.38430 * 120.00043 * 179.97438 * 15 14 13 22 22 F 1.35103 * 119.99618 * 359.97438 * 21 15 14 23 23 H 0.96999 * 120.00252 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47089 * 59.99899 * 9 7 2 25 25 H 1.09003 * 109.47404 * 299.99828 * 9 7 2 26 26 H 1.09000 * 109.47151 * 59.99992 * 10 9 7 27 27 H 1.09003 * 109.47028 * 299.99448 * 10 9 7 28 28 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 29 29 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 30 30 H 1.08001 * 120.00383 * 0.02562 * 16 15 14 31 31 H 1.07999 * 120.00600 * 179.70022 * 19 17 16 32 32 H 1.08011 * 120.00032 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2835 -4.9672 -0.0015 13 8 2.1629 -6.1297 -0.0031 14 6 1.3721 -7.3474 -0.0031 15 6 2.2901 -8.5425 -0.0045 16 6 3.6602 -8.3614 -0.0113 17 6 4.5035 -9.4592 -0.0078 18 9 5.8428 -9.2822 -0.0089 19 6 3.9743 -10.7388 -0.0085 20 6 2.6045 -10.9198 -0.0070 21 6 1.7610 -9.8217 -0.0042 22 9 0.4216 -9.9987 -0.0022 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8923 28 1 0.7436 -7.3725 0.8872 29 1 0.7428 -7.3720 -0.8928 30 1 4.0730 -7.3634 -0.0152 31 1 4.6321 -11.5953 -0.0106 32 1 2.1917 -11.9179 -0.0080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:47 Heat of formation + Delta-G solvation = -165.431233 kcal Electronic energy + Delta-G solvation = -19302.434376 eV Core-core repulsion = 15670.773214 eV Total energy + Delta-G solvation = -3631.661161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.25775 -49.19324 -40.22354 -39.08516 -36.31865 -33.62921 -32.60323 -31.15135 -30.47206 -27.34130 -25.75834 -23.48250 -22.37711 -21.80147 -19.90622 -18.06133 -17.72626 -17.55962 -16.98018 -16.62553 -16.21630 -16.00340 -15.62187 -15.46300 -14.72475 -14.50057 -14.47518 -14.02146 -13.81421 -13.36056 -12.94490 -12.61684 -12.28976 -12.14764 -12.05279 -11.39817 -11.24073 -11.00188 -10.72914 -10.64735 -10.10060 -10.01613 -9.62289 -9.44865 -9.19684 -8.86972 -8.40684 -6.04161 -4.09236 0.54280 0.65883 2.72092 2.82833 2.97092 3.29436 3.36982 3.40483 3.78286 3.81815 4.13872 4.36035 4.43524 4.61397 4.78052 5.13749 5.14855 5.30059 5.31518 5.39512 5.52527 5.65648 5.70181 5.84681 6.06095 6.13525 6.40432 6.54571 6.83654 7.63327 7.69103 7.94744 8.17123 8.33904 8.98001 9.55180 11.06858 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031301 B = 0.003339 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.339491 B = 8383.283796 C = 9251.873470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.102 4.102 11 C 0.459 3.541 12 O -0.501 6.501 13 O -0.364 6.364 14 C 0.106 3.894 15 C -0.091 4.091 16 C -0.104 4.104 17 C 0.092 3.908 18 F -0.133 7.133 19 C -0.128 4.128 20 C -0.123 4.123 21 C 0.095 3.905 22 F -0.131 7.131 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 -22.523 -0.021 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.302 3.698 12 O -0.387 6.387 13 O -0.282 6.282 14 C 0.032 3.968 15 C -0.092 4.092 16 C -0.123 4.123 17 C 0.072 3.928 18 F -0.112 7.112 19 C -0.147 4.147 20 C -0.142 4.142 21 C 0.075 3.925 22 F -0.109 7.109 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.143 -22.428 -0.022 23.538 hybrid contribution 0.237 0.773 0.000 0.809 sum 7.380 -21.655 -0.021 22.878 Atomic orbital electron populations 1.69999 1.06105 1.26703 1.49925 1.25025 0.94861 0.99380 0.95082 0.86481 0.80026 0.83517 0.77634 1.19625 1.20958 1.20954 1.21180 0.93117 0.90581 1.51805 0.92215 1.19040 0.93238 0.89275 0.98973 1.21800 1.00721 0.87296 1.04150 1.24852 0.88030 0.85303 0.71598 1.90657 1.15823 1.87477 1.44700 1.86503 1.41793 1.14691 1.85238 1.21463 0.91422 0.79962 1.03977 1.19559 0.94530 0.92749 1.02333 1.20996 0.91711 1.00048 0.99528 1.17678 0.77645 0.93968 1.03488 1.91534 1.29583 1.96213 1.93825 1.21018 0.95287 0.96311 1.02072 1.20921 0.92517 0.98661 1.02061 1.17361 0.77725 0.92941 1.04464 1.91540 1.29508 1.96102 1.93771 0.92867 0.95531 0.95525 0.88779 0.88788 0.89193 0.89204 0.82292 0.83619 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -2.01 5.75 -27.88 -0.16 -2.17 16 11 C 0.46 8.67 7.96 36.01 0.29 8.96 16 12 O -0.50 -11.09 15.73 -18.75 -0.29 -11.39 16 13 O -0.36 -5.61 8.69 -39.26 -0.34 -5.95 16 14 C 0.11 1.41 5.43 36.01 0.20 1.60 16 15 C -0.09 -1.02 5.88 -104.56 -0.62 -1.64 16 16 C -0.10 -1.12 9.36 -39.52 -0.37 -1.49 16 17 C 0.09 0.89 7.30 -39.42 -0.29 0.60 16 18 F -0.13 -1.39 17.27 2.25 0.04 -1.35 16 19 C -0.13 -0.97 10.02 -39.52 -0.40 -1.36 16 20 C -0.12 -0.94 10.02 -39.52 -0.40 -1.34 16 21 C 0.09 0.95 7.24 -39.43 -0.29 0.67 16 22 F -0.13 -1.43 16.80 2.25 0.04 -1.39 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 27 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 28 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 29 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.16 1.74 6.99 -52.49 -0.37 1.37 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -31.48 298.34 -6.19 -37.67 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.28 Total: -3.48 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.56 Total: -8.80 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.64 Total: -17.34 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.48 -6.19 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.758 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds