Wall clock time and date at job start Mon Mar 30 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48495 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47002 * 300.00427 * 3 2 1 6 6 H 1.48497 * 109.46906 * 59.99842 * 3 2 1 7 7 C 1.37877 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00104 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 11 16 16 C 1.38202 * 119.99930 * 359.72203 * 15 14 13 17 17 C 1.38431 * 120.00033 * 179.77120 * 16 15 14 18 18 F 1.35095 * 120.00505 * 180.27154 * 17 16 15 19 19 C 1.38473 * 119.99908 * 0.52836 * 17 16 15 20 20 C 1.38162 * 119.99620 * 359.72634 * 19 17 16 21 21 C 1.38430 * 120.00043 * 179.97438 * 15 14 13 22 22 F 1.35103 * 119.99618 * 359.97438 * 21 15 14 23 23 H 0.96999 * 120.00252 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47089 * 59.99899 * 9 7 2 25 25 H 1.09003 * 109.47404 * 299.99828 * 9 7 2 26 26 H 1.09000 * 109.47151 * 59.99992 * 10 9 7 27 27 H 1.09003 * 109.47028 * 299.99448 * 10 9 7 28 28 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 29 29 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 30 30 H 1.08001 * 120.00383 * 0.02562 * 16 15 14 31 31 H 1.07999 * 120.00600 * 179.70022 * 19 17 16 32 32 H 1.08011 * 120.00032 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2835 -4.9672 -0.0015 13 8 2.1629 -6.1297 -0.0031 14 6 1.3721 -7.3474 -0.0031 15 6 2.2901 -8.5425 -0.0045 16 6 3.6602 -8.3614 -0.0113 17 6 4.5035 -9.4592 -0.0078 18 9 5.8428 -9.2822 -0.0089 19 6 3.9743 -10.7388 -0.0085 20 6 2.6045 -10.9198 -0.0070 21 6 1.7610 -9.8217 -0.0042 22 9 0.4216 -9.9987 -0.0022 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8923 28 1 0.7436 -7.3725 0.8872 29 1 0.7428 -7.3720 -0.8928 30 1 4.0730 -7.3634 -0.0152 31 1 4.6321 -11.5953 -0.0106 32 1 2.1917 -11.9179 -0.0080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:47 Heat of formation + Delta-G solvation = -182.466304 kcal Electronic energy + Delta-G solvation = -19303.173072 eV Core-core repulsion = 15670.773214 eV Total energy + Delta-G solvation = -3632.399858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.06687 -49.95948 -41.64123 -39.94881 -37.73472 -35.66029 -33.59405 -32.98864 -31.22829 -28.66404 -27.38587 -24.59365 -23.70814 -22.85963 -21.49041 -19.21287 -18.80637 -18.46878 -18.26980 -17.88275 -17.72543 -16.94971 -16.89442 -16.46376 -16.42470 -15.47097 -15.43124 -15.31336 -14.82606 -14.33275 -14.25146 -14.20822 -13.73271 -13.48783 -13.06480 -12.98328 -12.85441 -12.48658 -12.13621 -12.06064 -11.97251 -11.76612 -11.48162 -11.26445 -10.58874 -10.20577 -9.63458 -8.20301 -6.33907 -0.20888 -0.05450 1.17619 1.42849 1.44629 1.50960 1.58913 2.24431 2.42943 3.00239 3.06313 3.13888 3.33390 3.59419 3.84995 3.96664 4.02548 4.04579 4.25357 4.43887 4.44900 4.59081 4.80950 4.88406 4.96208 4.97803 5.04362 5.30711 5.47293 5.54772 5.68600 5.80549 6.12614 6.72017 6.85222 7.36530 8.92541 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031301 B = 0.003339 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.339491 B = 8383.283796 C = 9251.873470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.036 3.964 10 C -0.093 4.093 11 C 0.468 3.532 12 O -0.541 6.541 13 O -0.349 6.349 14 C 0.104 3.896 15 C -0.105 4.105 16 C -0.116 4.116 17 C 0.084 3.916 18 F -0.138 7.138 19 C -0.111 4.111 20 C -0.109 4.109 21 C 0.085 3.915 22 F -0.139 7.139 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.180 0.820 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 -24.005 -0.023 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.097 0.903 9 C -0.001 4.001 10 C -0.130 4.130 11 C 0.314 3.686 12 O -0.430 6.430 13 O -0.266 6.266 14 C 0.030 3.970 15 C -0.106 4.106 16 C -0.134 4.134 17 C 0.064 3.936 18 F -0.117 7.117 19 C -0.129 4.129 20 C -0.127 4.127 21 C 0.066 3.934 22 F -0.118 7.118 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.169 0.831 31 H 0.197 0.803 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.548 -23.940 -0.024 25.773 hybrid contribution -0.493 1.093 0.001 1.199 sum 9.055 -22.847 -0.023 24.576 Atomic orbital electron populations 1.70161 1.08225 1.27869 1.51318 1.26097 0.95726 1.03870 0.94555 0.85265 0.79332 0.78093 0.77519 1.17633 1.20685 1.20674 1.21673 0.94151 0.91232 1.50980 0.90349 1.18824 0.93742 0.91976 0.95562 1.21545 0.99333 0.85602 1.06515 1.24572 0.87214 0.86179 0.70678 1.90651 1.17479 1.88147 1.46706 1.86459 1.41252 1.14509 1.84371 1.21604 0.91962 0.79621 1.03821 1.19373 0.94370 0.92315 1.04566 1.20941 0.91665 1.00385 1.00442 1.17814 0.77286 0.94576 1.03897 1.91523 1.29935 1.96315 1.93925 1.21386 0.95623 0.96331 0.99588 1.21276 0.92170 0.99249 0.99997 1.17581 0.77703 0.93190 1.04943 1.91523 1.30217 1.96111 1.93903 0.92766 0.99103 0.99095 0.86323 0.86333 0.89528 0.89535 0.83077 0.80279 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 4 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 1.94 4.26 29.85 0.13 2.07 16 10 C -0.09 -3.63 5.75 29.85 0.17 -3.46 16 11 C 0.47 17.98 7.96 71.24 0.57 18.55 16 12 O -0.54 -24.96 15.73 21.97 0.35 -24.61 16 13 O -0.35 -10.73 8.69 -51.42 -0.45 -11.18 16 14 C 0.10 2.79 5.43 71.24 0.39 3.18 16 15 C -0.11 -2.30 5.88 -19.83 -0.12 -2.42 16 16 C -0.12 -2.38 9.36 22.31 0.21 -2.17 16 17 C 0.08 1.44 7.30 22.37 0.16 1.61 16 18 F -0.14 -2.63 17.27 44.97 0.78 -1.85 16 19 C -0.11 -1.27 10.02 22.31 0.22 -1.05 16 20 C -0.11 -1.29 10.02 22.31 0.22 -1.07 16 21 C 0.09 1.58 7.24 22.37 0.16 1.74 16 22 F -0.14 -2.91 16.80 44.97 0.76 -2.15 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 25 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 26 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 27 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 28 H 0.09 2.37 8.13 -2.39 -0.02 2.35 16 29 H 0.09 2.37 8.13 -2.39 -0.02 2.35 16 30 H 0.15 3.25 6.99 -2.91 -0.02 3.23 16 31 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.18 0.98 8.06 -2.90 -0.02 0.96 16 Total: -1.00 -70.14 298.34 7.70 -62.44 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 1.14 Total: 2.13 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 2.81 Total: -12.60 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.10 Total: -35.79 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.53 Total: -4.00 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.14 7.70 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.022 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds