Wall clock time and date at job start Mon Mar 30 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.46866 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99799 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99805 * 3 2 1 7 7 C 1.37880 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47114 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00071 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.45194 * 116.99930 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47090 * 179.97438 * 14 13 11 16 16 C 1.38204 * 119.97395 * 269.72452 * 15 14 13 17 17 C 1.38481 * 120.02119 * 179.76096 * 16 15 14 18 18 F 1.35102 * 120.01187 * 180.27294 * 17 16 15 19 19 C 1.38415 * 119.97301 * 0.53908 * 17 16 15 20 20 C 1.38417 * 119.95232 * 359.71435 * 19 17 16 21 21 F 1.35102 * 120.01414 * 179.97438 * 20 19 17 22 22 C 1.38209 * 119.97078 * 89.99659 * 15 14 13 23 23 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47133 * 59.99453 * 9 7 2 25 25 H 1.09008 * 109.46904 * 299.99903 * 9 7 2 26 26 H 1.09003 * 109.47220 * 60.00053 * 10 9 7 27 27 H 1.08995 * 109.47044 * 299.99739 * 10 9 7 28 28 H 1.09001 * 109.46972 * 59.99949 * 14 13 11 29 29 H 1.09000 * 109.47619 * 300.00155 * 14 13 11 30 30 H 1.08001 * 119.99170 * 0.02562 * 16 15 14 31 31 H 1.08003 * 120.02310 * 179.69525 * 19 17 16 32 32 H 1.07994 * 119.99053 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2836 -4.9672 0.0010 13 8 2.1630 -6.1297 -0.0003 14 6 1.3722 -7.3474 0.0009 15 6 2.2902 -8.5425 -0.0004 16 6 2.7045 -9.0937 -1.1982 17 6 3.5520 -10.1889 -1.2005 18 9 3.9612 -10.7241 -2.3716 19 6 3.9752 -10.7383 -0.0027 20 6 3.5554 -10.1887 1.1963 21 9 3.9674 -10.7244 2.3662 22 6 2.7126 -9.0900 1.1963 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8898 26 1 2.8720 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.7424 -7.3724 -0.8884 29 1 0.7443 -7.3720 0.8916 30 1 2.3705 -8.6675 -2.1327 31 1 4.6322 -11.5955 -0.0036 32 1 2.3851 -8.6609 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:10 Heat of formation + Delta-G solvation = -165.837675 kcal Electronic energy + Delta-G solvation = -19068.392620 eV Core-core repulsion = 15436.713834 eV Total energy + Delta-G solvation = -3631.678786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.35583 -49.33613 -40.24141 -39.16205 -36.24105 -33.62798 -32.46513 -31.13616 -30.73779 -27.42138 -25.73780 -23.25679 -22.62994 -21.84647 -19.90586 -18.24299 -17.64977 -17.44587 -16.79878 -16.40305 -16.32451 -16.22970 -15.78933 -15.64393 -15.47920 -14.67117 -14.49077 -13.84228 -13.67840 -13.07566 -12.80504 -12.33987 -12.33329 -12.20957 -12.15478 -11.72592 -11.23526 -10.98428 -10.66803 -10.55226 -10.08984 -10.05027 -9.68697 -9.37217 -9.20254 -9.14402 -8.40540 -6.04370 -4.09433 0.45350 0.57427 2.67658 2.72422 3.27717 3.30098 3.36587 3.39357 3.49284 3.93805 4.10771 4.39461 4.42363 4.52652 4.70999 4.96970 5.12911 5.25557 5.31224 5.38214 5.55781 5.56137 5.60012 5.90422 6.06938 6.14174 6.33806 6.54338 6.83733 7.62838 7.68962 7.94489 8.17909 8.34274 8.97596 9.54911 11.06590 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032840 B = 0.002982 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.410472 B = 9388.041203 C = 9528.671700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.458 3.542 12 O -0.503 6.503 13 O -0.360 6.360 14 C 0.101 3.899 15 C -0.030 4.030 16 C -0.140 4.140 17 C 0.129 3.871 18 F -0.129 7.129 19 C -0.186 4.186 20 C 0.129 3.871 21 F -0.129 7.129 22 C -0.140 4.140 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -21.755 0.001 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.301 3.699 12 O -0.389 6.389 13 O -0.279 6.279 14 C 0.027 3.973 15 C -0.030 4.030 16 C -0.159 4.159 17 C 0.109 3.891 18 F -0.108 7.108 19 C -0.206 4.206 20 C 0.109 3.891 21 F -0.108 7.108 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.362 -21.707 0.006 22.620 hybrid contribution 0.472 0.563 -0.010 0.734 sum 6.834 -21.144 -0.004 22.221 Atomic orbital electron populations 1.69987 1.06103 1.26814 1.49861 1.25021 0.94860 0.99359 0.95072 0.86535 0.79771 0.83186 0.78152 1.20586 1.21181 1.19768 1.21150 0.93092 0.90611 1.51909 0.92277 1.19031 0.93223 0.89262 0.98937 1.21796 1.00717 0.87363 1.04145 1.24862 0.88007 0.85440 0.71552 1.90650 1.15822 1.87501 1.44921 1.86645 1.41790 1.14385 1.85038 1.21679 0.91341 0.80030 1.04210 1.19203 0.96947 0.95134 0.91742 1.21181 0.98784 0.96057 0.99882 1.17189 0.96924 0.94013 0.80958 1.91550 1.88721 1.85169 1.45342 1.21071 1.05199 1.03899 0.90422 1.17189 0.96944 0.93974 0.80981 1.91550 1.88635 1.85157 1.45442 1.21180 0.98803 0.96007 0.99907 0.92814 0.95545 0.95549 0.88829 0.88827 0.89703 0.89694 0.83492 0.83259 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.84 4.26 -27.89 -0.12 0.72 16 10 C -0.10 -2.02 5.75 -27.89 -0.16 -2.18 16 11 C 0.46 8.51 7.96 36.01 0.29 8.80 16 12 O -0.50 -10.84 15.73 -18.75 -0.29 -11.13 16 13 O -0.36 -5.48 10.20 -39.27 -0.40 -5.89 16 14 C 0.10 1.21 5.59 36.01 0.20 1.41 16 15 C -0.03 -0.30 5.52 -104.64 -0.58 -0.88 16 16 C -0.14 -1.32 9.68 -39.50 -0.38 -1.70 16 17 C 0.13 1.19 7.30 -39.43 -0.29 0.91 16 18 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 19 C -0.19 -1.60 10.01 -39.45 -0.39 -1.99 16 20 C 0.13 1.19 7.30 -39.43 -0.29 0.91 16 21 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 22 C -0.14 -1.32 9.68 -39.50 -0.38 -1.70 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.03 0.73 8.10 -51.92 -0.42 0.31 16 26 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 27 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 28 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 30 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -31.25 301.08 -6.22 -37.47 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -3.34 Total: -3.75 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -2.51 Total: -9.03 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.70 Total: -17.02 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.25 -6.22 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.368 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds