Wall clock time and date at job start Mon Mar 30 2020 00:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.46866 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99799 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99805 * 3 2 1 7 7 C 1.37880 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47114 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00071 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.45194 * 116.99930 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47090 * 179.97438 * 14 13 11 16 16 C 1.38204 * 119.97395 * 269.72452 * 15 14 13 17 17 C 1.38481 * 120.02119 * 179.76096 * 16 15 14 18 18 F 1.35102 * 120.01187 * 180.27294 * 17 16 15 19 19 C 1.38415 * 119.97301 * 0.53908 * 17 16 15 20 20 C 1.38417 * 119.95232 * 359.71435 * 19 17 16 21 21 F 1.35102 * 120.01414 * 179.97438 * 20 19 17 22 22 C 1.38209 * 119.97078 * 89.99659 * 15 14 13 23 23 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47133 * 59.99453 * 9 7 2 25 25 H 1.09008 * 109.46904 * 299.99903 * 9 7 2 26 26 H 1.09003 * 109.47220 * 60.00053 * 10 9 7 27 27 H 1.08995 * 109.47044 * 299.99739 * 10 9 7 28 28 H 1.09001 * 109.46972 * 59.99949 * 14 13 11 29 29 H 1.09000 * 109.47619 * 300.00155 * 14 13 11 30 30 H 1.08001 * 119.99170 * 0.02562 * 16 15 14 31 31 H 1.08003 * 120.02310 * 179.69525 * 19 17 16 32 32 H 1.07994 * 119.99053 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2836 -4.9672 0.0010 13 8 2.1630 -6.1297 -0.0003 14 6 1.3722 -7.3474 0.0009 15 6 2.2902 -8.5425 -0.0004 16 6 2.7045 -9.0937 -1.1982 17 6 3.5520 -10.1889 -1.2005 18 9 3.9612 -10.7241 -2.3716 19 6 3.9752 -10.7383 -0.0027 20 6 3.5554 -10.1887 1.1963 21 9 3.9674 -10.7244 2.3662 22 6 2.7126 -9.0900 1.1963 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8898 26 1 2.8720 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.7424 -7.3724 -0.8884 29 1 0.7443 -7.3720 0.8916 30 1 2.3705 -8.6675 -2.1327 31 1 4.6322 -11.5955 -0.0036 32 1 2.3851 -8.6609 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:09 Heat of formation + Delta-G solvation = -182.324310 kcal Electronic energy + Delta-G solvation = -19069.107534 eV Core-core repulsion = 15436.713834 eV Total energy + Delta-G solvation = -3632.393700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.09014 -50.07000 -41.57001 -40.04218 -37.60325 -35.63273 -33.46504 -32.91696 -31.46541 -28.68233 -27.36828 -24.22995 -23.98649 -22.90212 -21.48554 -19.09389 -19.04905 -18.44681 -18.11176 -17.48565 -17.48274 -17.06327 -16.89459 -16.70533 -16.46135 -16.38074 -15.42086 -15.19830 -14.80896 -14.23513 -14.16692 -13.99597 -13.55034 -13.21795 -13.04949 -13.00785 -12.82023 -12.53775 -12.45773 -11.98794 -11.75034 -11.74028 -11.44520 -11.26766 -10.56295 -10.17542 -9.87396 -8.18892 -6.32289 -0.30699 -0.15380 1.24131 1.44635 1.46647 1.57302 1.64303 2.34703 2.45658 2.70607 3.15182 3.19363 3.29378 3.68502 3.85603 3.91785 4.05777 4.07552 4.29371 4.46837 4.47824 4.53582 4.66297 4.87100 4.88176 4.93700 5.13276 5.33530 5.49183 5.57759 5.61818 5.82395 6.14816 6.78887 6.87611 7.37991 8.93595 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032840 B = 0.002982 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.410472 B = 9388.041203 C = 9528.671700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.037 3.963 10 C -0.095 4.095 11 C 0.469 3.531 12 O -0.540 6.540 13 O -0.351 6.351 14 C 0.098 3.902 15 C -0.039 4.039 16 C -0.138 4.138 17 C 0.122 3.878 18 F -0.132 7.132 19 C -0.175 4.175 20 C 0.122 3.878 21 F -0.132 7.132 22 C -0.138 4.138 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.935 -22.334 0.001 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.132 4.132 11 C 0.314 3.686 12 O -0.430 6.430 13 O -0.269 6.269 14 C 0.024 3.976 15 C -0.039 4.039 16 C -0.157 4.157 17 C 0.102 3.898 18 F -0.111 7.111 19 C -0.194 4.194 20 C 0.102 3.898 21 F -0.111 7.111 22 C -0.157 4.157 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.174 0.826 31 H 0.187 0.813 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.458 -22.320 0.007 23.869 hybrid contribution -0.166 0.602 -0.011 0.625 sum 8.292 -21.718 -0.005 23.247 Atomic orbital electron populations 1.70149 1.08171 1.27906 1.51279 1.26074 0.95716 1.03781 0.94572 0.85335 0.78688 0.77831 0.78498 1.19769 1.21244 1.18010 1.21655 0.94116 0.91358 1.51058 0.90493 1.18810 0.93714 0.91881 0.95596 1.21527 0.99366 0.86037 1.06304 1.24452 0.87149 0.86232 0.70747 1.90645 1.17331 1.88166 1.46810 1.86587 1.41635 1.14473 1.84191 1.21928 0.91724 0.78975 1.04940 1.18994 0.97753 0.94870 0.92330 1.21306 0.98329 0.95949 1.00089 1.17208 0.97262 0.94200 0.81102 1.91547 1.88782 1.85209 1.45531 1.21269 1.04466 1.03898 0.89806 1.17207 0.97282 0.94158 0.81125 1.91547 1.88696 1.85196 1.45631 1.21305 0.98345 0.95908 1.00115 0.92770 0.99025 0.99026 0.86613 0.86594 0.89101 0.89091 0.82564 0.81307 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.04 1.96 4.26 29.85 0.13 2.09 16 10 C -0.10 -3.66 5.75 29.85 0.17 -3.49 16 11 C 0.47 17.23 7.96 71.24 0.57 17.80 16 12 O -0.54 -23.71 15.73 21.97 0.35 -23.36 16 13 O -0.35 -10.19 10.20 -51.45 -0.52 -10.72 16 14 C 0.10 2.21 5.59 71.24 0.40 2.61 16 15 C -0.04 -0.73 5.52 -19.88 -0.11 -0.84 16 16 C -0.14 -2.36 9.68 22.32 0.22 -2.14 16 17 C 0.12 2.02 7.30 22.37 0.16 2.18 16 18 F -0.13 -2.34 17.27 44.97 0.78 -1.56 16 19 C -0.18 -2.61 10.01 22.35 0.22 -2.38 16 20 C 0.12 2.02 7.30 22.37 0.16 2.18 16 21 F -0.13 -2.34 17.27 44.97 0.78 -1.56 16 22 C -0.14 -2.36 9.68 22.32 0.22 -2.15 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 25 H -0.01 -0.51 8.10 -2.38 -0.02 -0.53 16 26 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 27 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 30 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -67.81 301.08 7.66 -60.16 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.14 Total: 2.49 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 2.83 Total: -13.49 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.18 Total: -34.08 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 1.55 Total: -3.13 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -67.81 7.66 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.168 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds