Wall clock time and date at job start Mon Mar 30 2020 01:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47022 * 239.99506 * 3 2 1 5 5 H 1.48494 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47237 * 119.99851 * 3 2 1 7 7 C 1.37884 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47052 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99704 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99708 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99576 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46916 * 180.02562 * 14 13 11 16 16 N 1.46504 * 109.47172 * 64.99998 * 15 14 13 17 17 C 1.34771 * 124.17359 * 89.99722 * 16 15 14 18 18 O 1.21225 * 127.16028 * 0.06992 * 17 16 15 19 19 C 1.51585 * 105.68254 * 180.02562 * 17 16 15 20 20 N 1.47317 * 103.59313 * 359.97438 * 19 17 16 21 21 C 1.33785 * 124.17976 * 270.30611 * 16 15 14 22 22 O 1.21542 * 123.77022 * 359.97438 * 21 16 15 23 23 H 0.96995 * 119.99912 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46788 * 60.00441 * 9 7 2 25 25 H 1.08994 * 109.46677 * 300.00453 * 9 7 2 26 26 H 1.09004 * 109.47152 * 60.00110 * 10 9 7 27 27 H 1.09000 * 109.46994 * 300.00350 * 10 9 7 28 28 H 1.09000 * 109.46913 * 60.00427 * 14 13 11 29 29 H 1.09001 * 109.47126 * 300.00385 * 14 13 11 30 30 H 1.09000 * 109.47340 * 305.00033 * 15 14 13 31 31 H 1.08998 * 109.46969 * 184.99686 * 15 14 13 32 32 H 1.08998 * 110.59926 * 241.47169 * 19 17 16 33 33 H 1.09003 * 110.73128 * 118.58762 * 19 17 16 34 34 H 0.97001 * 126.68790 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4993 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4917 -4.9673 0.0045 12 8 0.2835 -4.9672 0.0045 13 8 2.1629 -6.1297 0.0052 14 6 1.3720 -7.3475 0.0063 15 6 2.3041 -8.5608 0.0076 16 7 3.0644 -8.5913 1.2595 17 6 2.6559 -9.2221 2.3781 18 8 1.6296 -9.8486 2.5322 19 6 3.7473 -8.9862 3.4034 20 7 4.7372 -8.1742 2.6747 21 6 4.2473 -7.9914 1.4352 22 8 4.8176 -7.3558 0.5703 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6051 -0.8873 28 1 0.7430 -7.3730 -0.8835 29 1 0.7435 -7.3716 0.8965 30 1 2.9929 -8.4907 -0.8343 31 1 1.7135 -9.4726 -0.0811 32 1 4.1865 -9.9321 3.7204 33 1 3.3585 -8.4384 4.2617 34 1 5.5762 -7.8336 3.0224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:35 Heat of formation + Delta-G solvation = -162.529611 kcal Electronic energy + Delta-G solvation = -20475.731905 eV Core-core repulsion = 16987.576834 eV Total energy + Delta-G solvation = -3488.155071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.27871 -41.48126 -39.61617 -37.93544 -37.10961 -35.84557 -35.67223 -33.20915 -31.34948 -28.58586 -28.04515 -25.32523 -23.88370 -23.84407 -21.59842 -21.29130 -19.20214 -18.99115 -18.33534 -18.11496 -17.85612 -17.44180 -16.99187 -16.51548 -16.42131 -16.22188 -15.33634 -15.22277 -14.89246 -14.77195 -14.33277 -14.28229 -13.90567 -13.74783 -13.30273 -12.90300 -12.80613 -12.54854 -12.12470 -12.03375 -11.78581 -11.71209 -11.49608 -11.32973 -11.28721 -10.92458 -10.58353 -10.36139 -8.21135 -6.35418 0.63873 1.17282 1.20064 1.42314 1.46976 1.54474 1.64834 2.02654 2.32976 2.42688 3.08403 3.12339 3.62573 3.72578 3.86613 4.03086 4.19117 4.33124 4.34512 4.38952 4.41474 4.51182 4.62427 4.77461 4.88490 5.30646 5.44018 5.51581 5.78085 5.91032 6.06877 6.11495 6.37315 6.74907 6.83234 7.18104 7.34829 8.91400 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.003812 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.131965 B = 7343.489736 C = 7764.813511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.093 4.093 11 C 0.465 3.535 12 O -0.543 6.543 13 O -0.349 6.349 14 C 0.038 3.962 15 C 0.127 3.873 16 N -0.582 5.582 17 C 0.514 3.486 18 O -0.502 6.502 19 C 0.072 3.928 20 N -0.715 5.715 21 C 0.692 3.308 22 O -0.569 6.569 23 H 0.265 0.735 24 H -0.009 1.009 25 H -0.010 1.010 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.164 0.836 33 H 0.148 0.852 34 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 -22.028 6.930 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.093 0.907 9 C 0.003 3.997 10 C -0.130 4.130 11 C 0.311 3.689 12 O -0.433 6.433 13 O -0.265 6.265 14 C -0.037 4.037 15 C 0.006 3.994 16 N -0.328 5.328 17 C 0.304 3.696 18 O -0.374 6.374 19 C -0.054 4.054 20 N -0.381 5.381 21 C 0.392 3.608 22 O -0.444 6.444 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 10.524 -21.990 6.483 25.226 hybrid contribution -0.149 1.054 -0.034 1.065 sum 10.375 -20.936 6.449 24.240 Atomic orbital electron populations 1.70150 1.08224 1.28075 1.51029 1.26095 0.95736 1.03827 0.94331 0.85352 0.78067 0.77225 0.79490 1.18794 1.21087 1.18691 1.21595 0.94015 0.91336 1.51551 0.90693 1.18781 0.93560 0.91850 0.95470 1.21473 0.99321 0.86463 1.05761 1.24455 0.87084 0.86630 0.70777 1.90624 1.17298 1.88369 1.46997 1.86661 1.41256 1.14722 1.83890 1.23664 0.94305 0.81967 1.03766 1.21886 0.95129 0.97300 0.85127 1.46479 1.21088 1.49902 1.15344 1.21630 0.87407 0.76510 0.84042 1.90822 1.25888 1.39681 1.81021 1.22709 0.86985 1.00816 0.94855 1.45415 1.24840 1.57020 1.10775 1.16085 0.80725 0.79392 0.84559 1.91033 1.62822 1.44151 1.46401 0.92665 0.99059 0.99169 0.87353 0.87067 0.88447 0.91928 0.86833 0.83809 0.81900 0.83412 0.70011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.98 44.27 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.28 4.26 29.85 0.13 2.40 16 10 C -0.09 -4.01 5.75 29.85 0.17 -3.84 16 11 C 0.47 19.39 7.96 71.24 0.57 19.96 16 12 O -0.54 -26.20 15.73 21.97 0.35 -25.85 16 13 O -0.35 -11.97 9.58 -51.15 -0.49 -12.46 16 14 C 0.04 1.00 5.81 71.98 0.42 1.41 16 15 C 0.13 2.41 6.10 86.38 0.53 2.94 16 16 N -0.58 -11.44 2.58 -773.13 -1.99 -13.43 16 17 C 0.51 8.47 8.32 87.94 0.73 9.21 16 18 O -0.50 -11.14 17.76 -2.86 -0.05 -11.19 16 19 C 0.07 0.48 7.97 85.76 0.68 1.16 16 20 N -0.71 -8.18 6.58 -480.29 -3.16 -11.34 16 21 C 0.69 14.96 8.30 179.44 1.49 16.45 16 22 O -0.57 -17.40 17.20 -3.85 -0.07 -17.46 16 23 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 24 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 25 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 26 H 0.11 4.29 8.14 -2.38 -0.02 4.27 16 27 H 0.11 4.41 8.14 -2.39 -0.02 4.39 16 28 H 0.10 2.39 8.13 -2.39 -0.02 2.37 16 29 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 30 H 0.11 2.10 7.87 -2.39 -0.02 2.08 16 31 H 0.14 1.90 8.00 -2.39 -0.02 1.88 16 32 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.45 3.11 8.96 -92.71 -0.83 2.28 16 Total: -1.00 -84.10 308.53 2.61 -81.49 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 0.30 Total: 3.57 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 5.41 Total: 18.90 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -4.87 Total: -83.29 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -0.26 Total: -66.97 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -84.10 2.61 -81.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.041 kcal (2) G-P(sol) polarization free energy of solvation -84.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds