Wall clock time and date at job start Mon Mar 30 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48495 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99419 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00640 * 180.27355 * 11 10 9 14 14 C 1.45193 * 117.00126 * 179.71955 * 13 11 10 15 15 C 1.50706 * 109.46845 * 180.02562 * 14 13 11 16 16 C 1.38259 * 119.96377 * 269.72265 * 15 14 13 17 17 C 1.38212 * 120.07330 * 179.76160 * 16 15 14 18 18 C 1.38416 * 119.99677 * 0.51828 * 17 16 15 19 19 F 1.35101 * 120.03567 * 179.71819 * 18 17 16 20 20 C 1.38648 * 119.92802 * 359.74214 * 18 17 16 21 21 F 1.35100 * 120.03448 * 180.02562 * 20 18 17 22 22 C 1.38208 * 119.96911 * 89.99923 * 15 14 13 23 23 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47178 * 59.99827 * 9 7 2 25 25 H 1.09006 * 109.46629 * 299.99631 * 9 7 2 26 26 H 1.09000 * 109.47764 * 59.99413 * 10 9 7 27 27 H 1.09006 * 109.46938 * 299.99191 * 10 9 7 28 28 H 1.08997 * 109.47488 * 299.99586 * 14 13 11 29 29 H 1.08997 * 109.47515 * 60.00401 * 14 13 11 30 30 H 1.08004 * 119.96221 * 0.02567 * 16 15 14 31 31 H 1.07996 * 120.00779 * 180.25632 * 17 16 15 32 32 H 1.08003 * 119.99783 * 359.95969 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0020 12 8 0.2833 -4.9671 -0.0020 13 8 2.1627 -6.1297 0.0037 14 6 1.3718 -7.3473 0.0091 15 6 2.2898 -8.5425 0.0156 16 6 2.7067 -9.0996 -1.1791 17 6 3.5525 -10.1927 -1.1758 18 6 3.9746 -10.7374 0.0246 19 9 4.7968 -11.8094 0.0287 20 6 3.5522 -10.1821 1.2227 21 9 3.9632 -10.7118 2.3956 22 6 2.7095 -9.0841 1.2159 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6239 -2.5575 0.8881 26 1 2.8712 -3.6048 0.8890 27 1 2.8724 -3.6040 -0.8911 28 1 0.7427 -7.3681 0.8990 29 1 0.7433 -7.3764 -0.8809 30 1 2.3744 -8.6775 -2.1161 31 1 3.8808 -10.6244 -2.1097 32 1 2.3801 -8.6504 2.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618153.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:12 Heat of formation + Delta-G solvation = -165.064905 kcal Electronic energy + Delta-G solvation = -19079.470671 eV Core-core repulsion = 15447.825394 eV Total energy + Delta-G solvation = -3631.645276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.78138 -48.85567 -40.24635 -39.22186 -36.22642 -33.62946 -32.22671 -31.22928 -31.04302 -27.09151 -25.63610 -23.65365 -22.52792 -21.79316 -19.90056 -18.31731 -17.60351 -17.44165 -17.37742 -16.62445 -16.32119 -16.09577 -15.58071 -15.26404 -14.83401 -14.56871 -14.48800 -14.20632 -13.84092 -13.14611 -12.90126 -12.59706 -12.26106 -12.20987 -11.99267 -11.61982 -11.23012 -11.00444 -10.65215 -10.53868 -10.09747 -10.03494 -9.66784 -9.46115 -9.20901 -9.03923 -8.41285 -6.04920 -4.09840 0.41940 0.60437 2.68721 2.72930 3.28808 3.31395 3.36652 3.39728 3.43255 3.95827 4.12443 4.25743 4.42317 4.57678 4.69253 5.01208 5.17494 5.30805 5.30901 5.40931 5.48291 5.57862 5.59886 5.95632 6.06847 6.14146 6.32975 6.55028 6.84168 7.62796 7.68703 7.94181 8.18269 8.34348 8.97458 9.54577 11.06097 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.002867 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.754797 B = 9762.859790 C = 9885.477058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.503 6.503 13 O -0.361 6.361 14 C 0.102 3.898 15 C -0.069 4.069 16 C -0.076 4.076 17 C -0.127 4.127 18 C 0.072 3.928 19 F -0.129 7.129 20 C 0.065 3.935 21 F -0.128 7.128 22 C -0.102 4.102 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 -21.312 -1.183 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.301 3.699 12 O -0.390 6.390 13 O -0.279 6.279 14 C 0.029 3.971 15 C -0.070 4.070 16 C -0.094 4.094 17 C -0.146 4.146 18 C 0.052 3.948 19 F -0.107 7.107 20 C 0.045 3.955 21 F -0.106 7.106 22 C -0.121 4.121 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.020 -21.289 -1.131 22.152 hybrid contribution 0.524 0.489 0.258 0.762 sum 6.544 -20.799 -0.873 21.822 Atomic orbital electron populations 1.70000 1.06098 1.26692 1.49970 1.25025 0.94864 0.99374 0.95091 0.86483 0.80035 0.83519 0.77634 1.19630 1.20960 1.20956 1.21190 0.93125 0.90604 1.51752 0.92231 1.19033 0.93229 0.89284 0.98929 1.21792 1.00705 0.87417 1.04124 1.24850 0.87997 0.85483 0.71561 1.90651 1.15832 1.87535 1.44940 1.86645 1.41846 1.14439 1.85001 1.21663 0.91380 0.80061 1.04037 1.19505 0.98842 0.96167 0.92480 1.21090 0.95344 0.94343 0.98622 1.21096 0.99224 0.97556 0.96735 1.17759 0.95358 0.88079 0.93590 1.91538 1.69533 1.52361 1.97276 1.17610 1.00805 0.96628 0.80455 1.91544 1.88832 1.85426 1.44806 1.21056 0.96595 0.94287 1.00143 0.92877 0.95546 0.95561 0.88854 0.88849 0.89984 0.89775 0.83699 0.83278 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -2.01 5.75 -27.89 -0.16 -2.17 16 11 C 0.46 8.43 7.96 36.00 0.29 8.72 16 12 O -0.50 -10.79 15.73 -18.76 -0.30 -11.08 16 13 O -0.36 -5.41 10.20 -39.26 -0.40 -5.82 16 14 C 0.10 1.19 5.59 36.01 0.20 1.40 16 15 C -0.07 -0.68 5.52 -104.62 -0.58 -1.26 16 16 C -0.08 -0.62 9.70 -39.58 -0.38 -1.00 16 17 C -0.13 -0.99 10.02 -39.53 -0.40 -1.39 16 18 C 0.07 0.71 7.31 -39.36 -0.29 0.42 16 19 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 20 C 0.07 0.68 7.31 -39.37 -0.29 0.39 16 21 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 22 C -0.10 -0.99 9.68 -39.53 -0.38 -1.37 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 27 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 28 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -31.79 300.96 -6.22 -38.01 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -3.34 Total: -4.35 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.52 Total: -8.80 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.70 Total: -16.90 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.79 -6.22 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618153.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.056 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds