Wall clock time and date at job start Mon Mar 30 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48495 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99419 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00640 * 180.27355 * 11 10 9 14 14 C 1.45193 * 117.00126 * 179.71955 * 13 11 10 15 15 C 1.50706 * 109.46845 * 180.02562 * 14 13 11 16 16 C 1.38259 * 119.96377 * 269.72265 * 15 14 13 17 17 C 1.38212 * 120.07330 * 179.76160 * 16 15 14 18 18 C 1.38416 * 119.99677 * 0.51828 * 17 16 15 19 19 F 1.35101 * 120.03567 * 179.71819 * 18 17 16 20 20 C 1.38648 * 119.92802 * 359.74214 * 18 17 16 21 21 F 1.35100 * 120.03448 * 180.02562 * 20 18 17 22 22 C 1.38208 * 119.96911 * 89.99923 * 15 14 13 23 23 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47178 * 59.99827 * 9 7 2 25 25 H 1.09006 * 109.46629 * 299.99631 * 9 7 2 26 26 H 1.09000 * 109.47764 * 59.99413 * 10 9 7 27 27 H 1.09006 * 109.46938 * 299.99191 * 10 9 7 28 28 H 1.08997 * 109.47488 * 299.99586 * 14 13 11 29 29 H 1.08997 * 109.47515 * 60.00401 * 14 13 11 30 30 H 1.08004 * 119.96221 * 0.02567 * 16 15 14 31 31 H 1.07996 * 120.00779 * 180.25632 * 17 16 15 32 32 H 1.08003 * 119.99783 * 359.95969 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0020 12 8 0.2833 -4.9671 -0.0020 13 8 2.1627 -6.1297 0.0037 14 6 1.3718 -7.3473 0.0091 15 6 2.2898 -8.5425 0.0156 16 6 2.7067 -9.0996 -1.1791 17 6 3.5525 -10.1927 -1.1758 18 6 3.9746 -10.7374 0.0246 19 9 4.7968 -11.8094 0.0287 20 6 3.5522 -10.1821 1.2227 21 9 3.9632 -10.7118 2.3956 22 6 2.7095 -9.0841 1.2159 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6239 -2.5575 0.8881 26 1 2.8712 -3.6048 0.8890 27 1 2.8724 -3.6040 -0.8911 28 1 0.7427 -7.3681 0.8990 29 1 0.7433 -7.3764 -0.8809 30 1 2.3744 -8.6775 -2.1161 31 1 3.8808 -10.6244 -2.1097 32 1 2.3801 -8.6504 2.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618153.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:12 Heat of formation + Delta-G solvation = -182.230080 kcal Electronic energy + Delta-G solvation = -19080.215009 eV Core-core repulsion = 15447.825394 eV Total energy + Delta-G solvation = -3632.389614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.57911 -49.66167 -41.54489 -40.08809 -37.57413 -35.62542 -33.33621 -32.76927 -31.87064 -28.47290 -27.12720 -24.37817 -24.14070 -22.78242 -21.46286 -19.09610 -19.07233 -18.41992 -18.25376 -18.03246 -17.40472 -17.39603 -16.91133 -16.45797 -16.08051 -15.62374 -15.45856 -15.14650 -15.02007 -14.34627 -14.21968 -14.10382 -13.57608 -13.32013 -13.23217 -12.84825 -12.78850 -12.47107 -12.33446 -11.98683 -11.72804 -11.71136 -11.42294 -11.23850 -10.56952 -10.17967 -9.83613 -8.18790 -6.31925 -0.34606 -0.08546 1.26349 1.44976 1.45372 1.58620 1.66839 2.38398 2.47087 2.67725 3.15438 3.18818 3.36686 3.51705 3.87283 3.95498 4.06801 4.17237 4.37080 4.49011 4.52531 4.65695 4.69778 4.80823 4.93520 4.95484 5.23519 5.36350 5.50092 5.58633 5.62269 5.83068 6.15404 6.81030 6.88831 7.38360 8.93903 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.002867 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.754797 B = 9762.859790 C = 9885.477058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.037 3.963 10 C -0.095 4.095 11 C 0.469 3.531 12 O -0.541 6.541 13 O -0.352 6.352 14 C 0.098 3.902 15 C -0.078 4.078 16 C -0.067 4.067 17 C -0.116 4.116 18 C 0.064 3.936 19 F -0.136 7.136 20 C 0.047 3.953 21 F -0.139 7.139 22 C -0.103 4.103 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.010 1.010 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.169 0.831 31 H 0.179 0.821 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.332 -21.628 -2.086 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.133 4.133 11 C 0.314 3.686 12 O -0.430 6.430 13 O -0.269 6.269 14 C 0.025 3.975 15 C -0.078 4.078 16 C -0.085 4.085 17 C -0.134 4.134 18 C 0.044 3.956 19 F -0.114 7.114 20 C 0.027 3.973 21 F -0.117 7.117 22 C -0.122 4.122 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.009 0.991 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.187 0.813 31 H 0.196 0.804 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.877 -21.638 -2.033 23.117 hybrid contribution -0.051 0.464 0.524 0.702 sum 7.826 -21.174 -1.509 22.625 Atomic orbital electron populations 1.70157 1.08158 1.27820 1.51382 1.26072 0.95718 1.03773 0.94621 0.85291 0.79330 0.78242 0.77509 1.17730 1.20656 1.20753 1.21687 0.94110 0.91361 1.50869 0.90507 1.18810 0.93720 0.91899 0.95580 1.21521 0.99350 0.86120 1.06278 1.24425 0.87126 0.86277 0.70754 1.90647 1.17350 1.88201 1.46843 1.86589 1.41677 1.14504 1.84141 1.21925 0.91768 0.78982 1.04795 1.19398 0.99406 0.95776 0.93251 1.21379 0.94331 0.93863 0.98900 1.21386 0.98133 0.96849 0.97063 1.18028 0.95418 0.88032 0.94153 1.91520 1.69814 1.52767 1.97336 1.17783 1.01750 0.97337 0.80434 1.91511 1.89074 1.85662 1.45500 1.21126 0.96310 0.94087 1.00635 0.92788 0.98940 0.99135 0.86776 0.86496 0.89824 0.88695 0.81330 0.80355 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 4 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.81 16 9 C 0.04 1.95 4.26 29.85 0.13 2.07 16 10 C -0.10 -3.63 5.75 29.85 0.17 -3.46 16 11 C 0.47 16.95 7.96 71.23 0.57 17.52 16 12 O -0.54 -23.46 15.73 21.94 0.35 -23.12 16 13 O -0.35 -9.91 10.20 -51.42 -0.52 -10.44 16 14 C 0.10 2.13 5.59 71.24 0.40 2.53 16 15 C -0.08 -1.36 5.52 -19.86 -0.11 -1.47 16 16 C -0.07 -0.88 9.70 22.27 0.22 -0.66 16 17 C -0.12 -1.46 10.02 22.31 0.22 -1.23 16 18 C 0.06 1.14 7.31 22.41 0.16 1.31 16 19 F -0.14 -2.72 17.18 44.97 0.77 -1.95 16 20 C 0.05 0.93 7.31 22.41 0.16 1.10 16 21 F -0.14 -3.15 17.18 44.97 0.77 -2.38 16 22 C -0.10 -1.87 9.68 22.30 0.22 -1.65 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 25 H -0.01 -0.58 8.10 -2.38 -0.02 -0.60 16 26 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 27 H 0.12 3.91 8.14 -2.38 -0.02 3.89 16 28 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 29 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 30 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -69.78 300.96 7.65 -62.13 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.14 Total: 0.70 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 2.83 Total: -13.10 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.94 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.18 Total: -33.55 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 1.55 Total: -4.32 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.78 7.65 -62.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618153.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.096 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds