Wall clock time and date at job start Mon Mar 30 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48502 * 109.47332 * 269.99858 * 3 2 1 5 5 H 1.48501 * 109.47158 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.46939 * 150.00110 * 3 2 1 7 7 C 1.37875 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99305 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00165 * 179.97438 * 7 2 1 10 10 C 1.53008 * 109.47046 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46898 * 179.97438 * 10 9 7 12 12 O 1.20821 * 120.00554 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99866 * 180.02562 * 11 10 9 14 14 C 1.45193 * 117.00178 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47235 * 179.97438 * 14 13 11 16 16 C 1.38425 * 120.02136 * 89.99931 * 15 14 13 17 17 F 1.35101 * 120.01402 * 359.70506 * 16 15 14 18 18 C 1.38476 * 119.97328 * 179.97438 * 16 15 14 19 19 C 1.38207 * 120.02410 * 0.02562 * 18 16 15 20 20 C 1.38207 * 120.05360 * 359.97438 * 19 18 16 21 21 C 1.38412 * 120.02814 * 269.97564 * 15 14 13 22 22 F 1.35096 * 120.01191 * 0.02562 * 21 15 14 23 23 H 0.97008 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47499 * 60.00274 * 9 7 2 25 25 H 1.08996 * 109.47566 * 300.00048 * 9 7 2 26 26 H 1.08999 * 109.46798 * 60.00303 * 10 9 7 27 27 H 1.08991 * 109.47044 * 299.99934 * 10 9 7 28 28 H 1.09008 * 109.47161 * 59.99893 * 14 13 11 29 29 H 1.09006 * 109.47296 * 299.99794 * 14 13 11 30 30 H 1.08001 * 119.98752 * 179.97438 * 18 16 15 31 31 H 1.08000 * 119.97200 * 180.02562 * 19 18 16 32 32 H 1.07995 * 119.99247 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5285 -2.6365 0.0001 12 8 6.1327 -1.5902 -0.0012 13 8 6.1997 -3.7990 0.0006 14 6 7.6496 -3.7230 -0.0001 15 6 8.2256 -5.1156 0.0011 16 6 8.4899 -5.7569 -1.1969 17 9 8.2259 -5.1369 -2.3678 18 6 9.0196 -7.0363 -1.1946 19 6 9.2841 -7.6731 0.0032 20 6 9.0207 -7.0339 1.1999 21 6 8.4913 -5.7542 1.2000 22 9 8.2339 -5.1296 2.3699 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8745 -0.6808 -0.8905 26 1 3.6578 -3.1513 -0.8879 27 1 3.6585 -3.1493 0.8920 28 1 7.9860 -3.1903 0.8895 29 1 7.9853 -3.1914 -0.8906 30 1 9.2255 -7.5370 -2.1291 31 1 9.6976 -8.6708 0.0040 32 1 9.2273 -7.5326 2.1352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618162.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:49 Heat of formation + Delta-G solvation = -160.235251 kcal Electronic energy + Delta-G solvation = -19653.668143 eV Core-core repulsion = 16022.232297 eV Total energy + Delta-G solvation = -3631.435847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.33904 -49.32940 -40.17291 -39.14269 -36.36545 -33.62645 -32.61239 -31.37474 -30.71694 -27.45952 -25.95891 -23.27761 -22.53127 -21.65171 -19.84074 -18.53443 -17.79272 -17.60870 -16.92766 -16.44799 -16.17238 -16.11654 -15.91115 -15.59155 -15.31369 -14.75100 -14.18343 -13.83067 -13.77924 -13.14895 -12.85867 -12.61810 -12.52201 -12.33282 -12.13673 -11.70984 -11.41886 -11.02122 -10.57476 -10.32867 -10.17358 -10.00499 -9.76465 -9.35486 -9.25167 -9.15826 -8.55100 -6.06652 -4.06546 0.43594 0.55752 2.66482 2.71678 3.24456 3.35148 3.41992 3.47861 3.51368 3.97877 4.09281 4.22366 4.38345 4.46964 4.69815 5.04704 5.10830 5.28096 5.29699 5.46873 5.49354 5.49778 5.61999 5.70237 5.99670 6.01591 6.30796 6.45342 6.74506 7.24068 7.31360 7.71001 8.16691 8.47393 8.95636 9.55091 11.05906 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034529 B = 0.003668 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.725484 B = 7631.918853 C = 7814.220849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.094 4.094 11 C 0.459 3.541 12 O -0.509 6.509 13 O -0.357 6.357 14 C 0.106 3.894 15 C -0.166 4.166 16 C 0.154 3.846 17 F -0.123 7.123 18 C -0.168 4.168 19 C -0.053 4.053 20 C -0.168 4.168 21 C 0.154 3.846 22 F -0.123 7.123 23 H 0.264 0.736 24 H 0.026 0.974 25 H 0.022 0.978 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.323 -17.002 0.038 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.132 4.132 11 C 0.303 3.697 12 O -0.396 6.396 13 O -0.275 6.275 14 C 0.032 3.968 15 C -0.168 4.168 16 C 0.134 3.866 17 F -0.101 7.101 18 C -0.187 4.187 19 C -0.071 4.071 20 C -0.187 4.187 21 C 0.134 3.866 22 F -0.102 7.102 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 21.354 -16.508 0.041 26.990 hybrid contribution 0.389 1.190 -0.029 1.252 sum 21.742 -15.318 0.013 26.596 Atomic orbital electron populations 1.69906 1.06271 1.27072 1.50632 1.24952 0.94727 0.99197 0.94215 0.86803 0.80593 0.83406 0.78801 1.20145 1.21293 1.18588 1.21025 0.88802 0.94824 1.51834 0.90625 1.19492 0.96944 0.89558 0.97976 1.21566 0.83065 1.03616 1.04949 1.24809 0.92735 0.80788 0.71371 1.90621 1.70567 1.33010 1.45395 1.86632 1.19540 1.36518 1.84793 1.21426 0.79162 0.91928 1.04319 1.19616 1.06867 0.98501 0.91831 1.17246 0.97689 0.91180 0.80496 1.91566 1.91275 1.82340 1.44968 1.21238 1.03283 0.93655 1.00551 1.20916 0.95942 0.99832 0.90434 1.21238 1.03266 0.93660 1.00562 1.17243 0.97716 0.91135 0.80511 1.91564 1.91409 1.82114 1.45063 0.92592 0.95553 0.95997 0.88233 0.88196 0.89607 0.89601 0.83612 0.83598 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 7 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.09 -1.90 5.75 -27.88 -0.16 -2.06 16 11 C 0.46 8.95 7.96 36.01 0.29 9.24 16 12 O -0.51 -11.20 15.73 -18.75 -0.29 -11.49 16 13 O -0.36 -6.09 10.20 -39.27 -0.40 -6.49 16 14 C 0.11 1.52 5.23 36.01 0.19 1.71 16 15 C -0.17 -1.98 5.53 -104.49 -0.58 -2.56 16 16 C 0.15 1.63 7.24 -39.42 -0.29 1.34 16 17 F -0.12 -1.49 16.48 2.25 0.04 -1.45 16 18 C -0.17 -1.24 10.03 -39.50 -0.40 -1.63 16 19 C -0.05 -0.31 10.04 -39.60 -0.40 -0.71 16 20 C -0.17 -1.24 10.03 -39.50 -0.40 -1.63 16 21 C 0.15 1.63 7.24 -39.43 -0.29 1.35 16 22 F -0.12 -1.49 16.48 2.25 0.04 -1.45 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 25 H 0.02 0.55 7.53 -51.93 -0.39 0.16 16 26 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 27 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 28 H 0.09 1.21 7.63 -51.92 -0.40 0.82 16 29 H 0.09 1.21 7.64 -51.93 -0.40 0.82 16 30 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.15 0.37 8.06 -52.49 -0.42 -0.06 16 32 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -33.24 295.29 -5.87 -39.11 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -3.26 Total: -4.86 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.55 Total: -8.49 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.77 Total: -27.04 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.70 Total: -17.98 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.07 Total: -2.90 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.24 -5.87 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618162.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.123 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds